View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_15 (Length: 499)

Name: NF10994_low_15
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_15
NF10994_low_15
[»] chr2 (3 HSPs)
chr2 (1-337)||(44622184-44622526)
chr2 (388-480)||(44618923-44619015)
chr2 (339-391)||(44619849-44619901)
[»] chr1 (1 HSPs)
chr1 (346-474)||(39435675-39435803)
[»] chr4 (2 HSPs)
chr4 (346-447)||(23634822-23634923)
chr4 (10-79)||(34977769-34977837)
[»] chr8 (1 HSPs)
chr8 (323-473)||(7115421-7115571)
[»] chr7 (2 HSPs)
chr7 (355-398)||(24534932-24534975)
chr7 (346-382)||(43449854-43449890)
[»] chr3 (1 HSPs)
chr3 (430-464)||(14083329-14083363)
[»] scaffold0153 (1 HSPs)
scaffold0153 (433-473)||(23000-23040)
[»] chr6 (3 HSPs)
chr6 (433-473)||(16479586-16479626)
chr6 (346-382)||(17109788-17109824)
chr6 (433-473)||(18487774-18487814)
[»] chr5 (1 HSPs)
chr5 (433-473)||(21823284-21823324)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 44622526 - 44622184
Alignment:
Q  1 tggcaattataagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatgatatattatgcattttttatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44622526 tggcaattataagagtctggtgcctgaaggaatttaatttctggttcattaaggatttttggattgatttaaaagatgatatattatgcattttttatta 44622427  T
Q  101 gaatttcattggaatgaagagctaacgaaaggaattaatagtattttcatcgctttcaacggttagctaattttcgccctatatctttggtgggctgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44622426 gaatttcattggaatgaagagctaacgaaaggaattaatagtatttttatcgctttcaacggttagctaattttcgccctatatctttggtgggctgctt 44622327  T
Q  201 gtataaggtattgtttaaggtgttaagaaaccgattgagaagtatgatgggcaatataatctcataatcttagtcaacctttatttaagagagacaaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44622326 gtataaggtattgtttaaggtgttaagaaaccgattgagaagtatgatgggcaatataatctcataatcttagtcaacctttattcaagagagacaaatt 44622227  T
Q  301 cttgatgg------aatagaaaatgagttggtggatgatgctc 337  Q
    ||||||||      |||||||||||||||||||||||||||||    
T  44622226 cttgatggaattctaatagaaaatgagttggtggatgatgctc 44622184  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 44619015 - 44618923
Alignment:
Q  388 tttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatgcttgacc 480  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44619015 tttgacttagtcgatcagaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatgcttgacc 44618923  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 44619901 - 44619849
Alignment:
Q  339 acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44619901 acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg 44619849  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 474
Target Start/End: Complemental strand, 39435803 - 39435675
Alignment:
Q  346 aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa 445  Q
    ||||||||||| ||||||||||||||| ||||||||| ||  | ||| | | | |||  |||||| ||  |||| |||||| |||||||||| |||||||    
T  39435803 aaaaaagagttgttattatttaaagttaattttgaaaaggcatatgattcaatagattagaggtatcttgatgtcgtaatggttaaaatgaaatttccaa 39435704  T
Q  446 ctctttggtgaaaatggatcatggaatgc 474  Q
    || | ||| |||||||||| |||||||||    
T  39435703 ctttgtggcgaaaatggattatggaatgc 39435675  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 447
Target Start/End: Original strand, 23634822 - 23634923
Alignment:
Q  346 aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa 445  Q
    ||||||||| | ||||||||||||||||| ||||| | || |||||| |  |||||| || | || ||  |||||||||||| ||||||||| |||||||    
T  23634822 aaaaaagagatgttattatttaaagttgaatttgagaaggcttttgattcggtcgattggtgatatcttgatgttgtaatgactaaaatgaattttccaa 23634921  T
Q  446 ct 447  Q
    ||    
T  23634922 ct 23634923  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 34977837 - 34977769
Alignment:
Q  10 taagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatga 79  Q
    ||||||||||| |||||| |||||| ||||| || ||||| |||||||||||| | |||||||| |||||    
T  34977837 taagagtctggggcctgacggaatt-aattttggtttcatcaaggatttttggctcgatttaaaggatga 34977769  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 7115571 - 7115421
Alignment:
Q  323 tggtggatgatgctc-aacgatacaaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttg 421  Q
    ||||||||||||||| || |||| ||||||||||| |||||||||||| |  |||| || | || ||||||||  |||||| ||| ||||||  |   ||    
T  7115571 tggtggatgatgctcgaaagata-aaaaaagagttgttattatttaaattcaatttggagaaggcttttgactctgtcgattggaagtacctggaaactg 7115473  T
Q  422 taatgattaaaatgaactttccaactctttggtgaaaatggatcatggaatg 473  Q
    ||||| | |||||||| ||||| ||| | |||  ||||||||||||||||||    
T  7115472 taatgttcaaaatgaattttcctactttatggcaaaaatggatcatggaatg 7115421  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 24534975 - 24534932
Alignment:
Q  355 ttattattatttaaagttgattttgaaatggattttgacttagt 398  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  24534975 ttattattatttaaagttgactttgaaaaggattttgagttagt 24534932  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 43449854 - 43449890
Alignment:
Q  346 aaaaaagagttattattatttaaagttgattttgaaa 382  Q
    |||||| |||||||||| |||||||||||||||||||    
T  43449854 aaaaaatagttattattgtttaaagttgattttgaaa 43449890  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 14083329 - 14083363
Alignment:
Q  430 aaaatgaactttccaactctttggtgaaaatggat 464  Q
    |||||||||||||||||||||||| ||||||||||    
T  14083329 aaaatgaactttccaactctttggagaaaatggat 14083363  T

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Target: scaffold0153 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 23000 - 23040
Alignment:
Q  433 atgaactttccaactctttggtgaaaatggatcatggaatg 473  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  23000 atgaattttccaactctttggagaaaatggattatggaatg 23040  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 16479626 - 16479586
Alignment:
Q  433 atgaactttccaactctttggtgaaaatggatcatggaatg 473  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  16479626 atgaattttccaactctttggagaaaatggattatggaatg 16479586  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 17109788 - 17109824
Alignment:
Q  346 aaaaaagagttattattatttaaagttgattttgaaa 382  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17109788 aaaaaagaattattattatttaatgttgattttgaaa 17109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 18487774 - 18487814
Alignment:
Q  433 atgaactttccaactctttggtgaaaatggatcatggaatg 473  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  18487774 atgaattttccaactctttggagaaaatggattatggaatg 18487814  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 21823284 - 21823324
Alignment:
Q  433 atgaactttccaactctttggtgaaaatggatcatggaatg 473  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  21823284 atgaattttccaactctttggagaaaatggattatggaatg 21823324  T

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