View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_18 (Length: 448)

Name: NF10994_low_18
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_18
NF10994_low_18
[»] chr2 (4 HSPs)
chr2 (1-437)||(43703858-43704294)
chr2 (1-437)||(43714829-43715265)
chr2 (1-437)||(43687000-43687436)
chr2 (24-437)||(43728563-43728976)
[»] chr1 (2 HSPs)
chr1 (31-327)||(25274045-25274341)
chr1 (364-437)||(25273959-25274032)
[»] scaffold0236 (2 HSPs)
scaffold0236 (31-327)||(23387-23683)
scaffold0236 (364-437)||(23696-23769)
[»] chr4 (1 HSPs)
chr4 (42-437)||(2690600-2690995)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43704294 - 43703858
Alignment:
Q  1 atactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704294 atactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttc 43704195  T
Q  101 atttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43704194 atttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagcagcaaca 43704095  T
Q  201 ctagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704094 ctagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagcc 43703995  T
Q  301 acattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43703994 acattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaa 43703895  T
Q  401 gtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  43703894 gtgaagaaaattaaaaaacaacccaattcccattctt 43703858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43715265 - 43714829
Alignment:
Q  1 atactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43715265 atactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttc 43715166  T
Q  101 atttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43715165 atttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagcagcaaca 43715066  T
Q  201 ctagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43715065 ctagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagcc 43714966  T
Q  301 acattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43714965 acattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaa 43714866  T
Q  401 gtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  43714865 gtgaagaaaattaaaaaacaacccaattcccattctt 43714829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43687436 - 43687000
Alignment:
Q  1 atactaagtaatacaatagatttagagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttc 100  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||||||||||  |||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  43687436 atactaagtaatacagtagattaagaacattaattccagctataacccataaatatttgtcgaaatgacccttgttaatattatcagaaatccacccttc 43687337  T
Q  101 atttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaaca 200  Q
    |||||||||||||| ||||||| |||| ||  | || ||||| ||||| ||||||||||||||  || ||||||||||||||||||| | ||||| ||||    
T  43687336 atttcctccacttgaagtagtgttttcaatcgtactgaatacaaaagaagataccaagtttccggcagccattgccaatccagaaagtgcagaagaaaca 43687237  T
Q  201 ctagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagcc 300  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  43687236 ctagacatagtctttggaaactctttgtaataaaactcattttggccaataacattgaatgcttcagctataccagccaaacaaagttgaggtgcaagcc 43687137  T
Q  301 acattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaa 400  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| | |  ||||||| ||||||||||| | |||||||||||||||||  ||  |     
T  43687136 acattgcagacattttcaacactccatgagtattattcaaaaatcctgcctgtattgctttctttctccttatactctcaaaaattgctgcaactacaat 43687037  T
Q  401 gtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43687036 gtgaagaaaattaaaaaacaacccaagtcccattctt 43687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 24 - 437
Target Start/End: Complemental strand, 43728976 - 43728563
Alignment:
Q  24 agagcattaattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttcatttcctccacttggagtagtgc 123  Q
    |||||| ||| |||| ||||||||  ||| ||||||||| || |||| ||||||||||||||||||| ||||||||| |||||||| || | ||||  |     
T  43728976 agagcactaactccagctataaccatatagtacttgtcgtaacgacccttgttaatattatcagaaatccacccttcttttcctcctctcgaagtaacgt 43728877  T
Q  124 tttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactc 223  Q
    |||||||| || | ||||| ||||| ||||||||||||||| || ||||| |||||||| ||||||||| || || |||||||||| || | ||||||||    
T  43728876 tttctatagtgttgaatacaaaagaagataccaagtttcctgcagccattcccaatccacaaagggaagcagaaatactagacatagtcctcggaaactc 43728777  T
Q  224 tttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacact 323  Q
    ||||||||| || ||||| ||||||||| |||||||   |||   ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||     
T  43728776 tttgtaatagaattcattttggccaatagcattgaatgcttcgcttataccacccaaacaaagttgaggtgcaagccacaatgcagacattttcaacacg 43728677  T
Q  324 ccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacc 423  Q
    |||||||||||||||||| ||||| | |  |||||||  |||||||||| | ||||||||   |||||||||| |||||| |||||||| ||||||||||    
T  43728676 ccatgagtatcattcaaaaatcctgcctgaattgctttttttctccttatactctcaaaagcagctgcagttaccaagtggagaaaatttaaaaacaacc 43728577  T
Q  424 caattcccattctt 437  Q
    ||||||||||||||    
T  43728576 caattcccattctt 43728563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 31 - 327
Target Start/End: Complemental strand, 25274341 - 25274045
Alignment:
Q  31 taattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttcatttcctccacttggagtagtgctttctat 130  Q
    |||||||| |||||| |||| | |||||||| |||||||| ||||| |||| |||||||| |||||| || |||||||| |||| ||||||| ||||||     
T  25274341 taattccagctataagccaagagtacttgtcaaaatgacccttgtttatatcatcagaaatccacccatcttttcctcctcttgaagtagtgttttctac 25274242  T
Q  131 aatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaa 230  Q
    |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| ||||  || |||||||||||| |  ||||||||||| |||||    
T  25274241 aatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaagcggcgacactagacatagtacttggaaactctgtgtaa 25274142  T
Q  231 taaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccat 327  Q
    ||||||||||| ||||| || | |||||    ||| | ||||||||| | ||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  25274141 taaaactcattttggcctatgaaattgactgcttcagatataccagctagacaaagttgaggtgcaagccacaatgccgacatttccaacactccat 25274045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 25274032 - 25273959
Alignment:
Q  364 ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    ||||||||| |||||||||||| |||||| ||| | |||  ||||||   |||||||| |||||||||||||||    
T  25274032 ttctccttatagtctcaaaaatcgctgcatttaccgagtagagaaaagataaaaacaaaccaattcccattctt 25273959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 23387 - 23683
Alignment:
Q  31 taattccaactataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttcatttcctccacttggagtagtgctttctat 130  Q
    |||||||| |||||| |||| | |||||||| |||||||| ||||| |||| |||||||| |||||| || |||||||| |||| ||||||| ||||||     
T  23387 taattccagctataagccaagagtacttgtcaaaatgacccttgtttatatcatcagaaatccacccatcttttcctcctcttgaagtagtgttttctac 23486  T
Q  131 aatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaa 230  Q
    |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| |||| ||| |||||||||||| |  ||||||||||| |||||    
T  23487 aatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaagcagcgacactagacatagtacttggaaactctgtgtaa 23586  T
Q  231 taaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccat 327  Q
    ||||||||||| ||||| || |  ||||    ||| | ||||||||||| ||| ||||||||||||||||||| ||| || |||| ||| |||||||    
T  23587 taaaactcattttggcctatgaatttgactgcttcagatataccagccagacagagttgaggtgcaagccacaatgccgaaatttccaaaactccat 23683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 23696 - 23769
Alignment:
Q  364 ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    ||||||||| ||||||||||||||||||| |||  ||||| ||||||   |||||||| |||||||||||||||    
T  23696 ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattctt 23769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 437
Target Start/End: Complemental strand, 2690995 - 2690600
Alignment:
Q  42 ataacccaataatacttgtcgaaatgacctttgttaatattatcagaaacccacccttcatttcctccacttggagtagtgctttctataatgctcaata 141  Q
    |||| |||||| |||||||||||| |||| |||||||||||||| |||| ||| || || ||||| |||||||  |||   ||||| | |||||| ||||    
T  2690995 ataagccaatagtacttgtcgaaacgacccttgttaatattatccgaaatccatccatcttttccaccacttgaggtaaccctttcgacaatgctgaata 2690896  T
Q  142 ctaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaactcatt 241  Q
      ||||| |||| || || ||||||  ||||| | | |||  |||| || |||||||  || |||||| |||| ||||| ||  |||| || ||||||||    
T  2690895 aaaaagaagatatcacgtatcctacggccattcctagtccgaaaagtgatgaagcaatgcttgacatagtcttgggaaattcggtgtagtagaactcatt 2690796  T
Q  242 ctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaa 341  Q
     ||||| |||||||||||   ||| ||||| ||| |||| |||||||||||   |||||||||||||||||| |||||||||  ||||| ||||||   |    
T  2690795 ttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccacattgcagacatgttcaacactgaatgaggatcattacca 2690696  T
Q  342 tatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt 437  Q
    |||||||| |||||||||    ||| ||||| |||||| | ||||| ||| |||| |||||| ||||||   |||||||| || | ||||||||||    
T  2690695 tatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtggagaaaagagaaaaacaatccgagtcccattctt 2690600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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