View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_19 (Length: 448)
Name: NF10994_low_19
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 48956745 - 48956335
Alignment:
| Q |
19 |
attgtatatggtcccatatataacaaatgttacagatctaatggcaacggggcatgaaatcctcctctctatcaacggttacaattgaatgtgactcact |
118 |
Q |
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| T |
48956745 |
attgtatatggtcccatatataacaaatgttacagatctaatggcaacggggcatgaaatcctcctctccatcaacggttacaattgaatgtgactcact |
48956646 |
T |
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| Q |
119 |
cacgtaactatagccgtgaaatcctccttcttcgtatacctactccgcc--ccccactcaataatactcattcattctccaaaagaaaaggaaattaaag |
216 |
Q |
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| T |
48956645 |
cacgtaactatagccgtgaaatcctccttcttcgtatacctactccgccccccccactcaataatactcattcattctccaaaagaaaagg-----aaag |
48956551 |
T |
|
| Q |
217 |
gagcactcactcattaactgtattcatagttgacttgacttattcaaaaagagagaatgagagcgacgtggtgattatatataagcataataaataaata |
316 |
Q |
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| T |
48956550 |
gagcactcactcattaactgtattcatagttgacttgacttattcaaaaagagagaatgagagcgacgtggtgattatatataagcat----aataaata |
48956455 |
T |
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| Q |
317 |
atgtacatcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaag |
416 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48956454 |
atgcacatcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaag |
48956355 |
T |
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| Q |
417 |
gctgcttcttccttcatctc |
436 |
Q |
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| T |
48956354 |
gctgcttcttccttcatctc |
48956335 |
T |
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