View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_2 (Length: 737)

Name: NF10994_low_2
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_2
NF10994_low_2
[»] chr8 (1 HSPs)
chr8 (20-724)||(33713428-33714153)


Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 724
Target Start/End: Complemental strand, 33714153 - 33713428
Alignment:
Q  20 atcgaatgtaatcagaagtgtggcatgtcacaaaatattctgataagttcatattactgcattatccacttaaaaagttataaaattttgttatcaatat 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33714153 atcgaatgtaatcagaagtgtggcatgtcacaaactattctgataagttcatattactgcattatccacttaaaaagttatcaaactttgttatcaatat 33714054  T
Q  120 tcaaataacaattctaaataagaagaagaagaa------caaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgacgccat 213  Q
     ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33714053 acaaataacaattctaaataagaagaagaagaagaagaacaaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgaggccat 33713954  T
Q  214 ttcaaaatgaagcttattaacaatgcgttctgaatcagacattacagcttcagtgtacttctcttcttgctccatgtaaacgtccatgtgccgcatcgct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33713953 ttcaaaatgaagcttattaacaatgcgttctgaatcagacattacagcttcagtgtacttctcttcttgctccatgtaaacgtccatgtgccgcatcgct 33713854  T
Q  314 actttgtcgctgaggcttgacatccagctgtaaggttcctcccatgttactccatggaaggagaaattttgaggcttctttggtgcttttggaggggttg 413  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33713853 actttgtcgttgaggcttgacatccagctgtaaggatcctcccatgttactccatggaaggagaaattttgaggcttctttggtgcttttggaggggttg 33713754  T
Q  414 gcgttggtgacggtggtggcttcttcgccgccttgtagtggcggaggagatggtggttgttgcggcgggtgacggcggggaaacggaatagaaggtgcat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33713753 gcgttggtgacggtggtggcttcttcgccgccttgtagtggcggaggagatggtggttgttgcggcgggtgacggcggggaaacggaatacaaggtgcat 33713654  T
Q  514 cacggt---gtggtttttgggatttagtgggtgtgtttagagaagggtttaagatttaagggaaaaacatcatttttaaatcaattcaaccaaataagca 610  Q
    ||| ||   |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33713653 cactgtgtggtggttgttgggatttagtgggtgtgtttagagaagggttttagatttaagggaaatacatcatttttaaataaattcaaccaaataagca 33713554  T
Q  611 tccaacttaatcaaattcattaaataaccaatataact------------nnnnnnnnctatcgtaacatgtgcatgtgtatctaagacaaggagagttc 698  Q
    ||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||| |||| | |    
T  33713553 tccaacttaatcaaattcattaaataaccaatataactaaaaaaaaaaaaaaaaaaaaatatcgtaacatgtgcatgtgtatctaagacaaagagaatcc 33713454  T
Q  699 ccatgttagctaaaacggaaaggttc 724  Q
    |||||||||||||||||||| |||||    
T  33713453 ccatgttagctaaaacggaatggttc 33713428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University