View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_20 (Length: 427)
Name: NF10994_low_20
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 19607781 - 19607889
Alignment:
| Q |
300 |
catggctccactcgcctcaatcacttactcaccaaccgtcatttactaacatctcaaaatgacgacgacgtggcggagactgtccgcctcggagcactta |
399 |
Q |
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| T |
19607781 |
catggctccactcgcctcaatcacttactcaccaaccgtcatttactaacatctcaaaatgacgacgacgtggctgagactgtccgcctcggagcactta |
19607880 |
T |
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| Q |
400 |
ccatggcca |
408 |
Q |
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||||||||| |
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| T |
19607881 |
ccatggcca |
19607889 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 19607601 - 19607668
Alignment:
| Q |
120 |
ataactccacctcccattcccattcccaatcccaataatccccccatttactactgctcccttcactg |
187 |
Q |
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| T |
19607601 |
ataactccacctcccattcccattcccaatcccaataatccccccattcactactgctcccttcactg |
19607668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 19607490 - 19607525
Alignment:
| Q |
9 |
agcacagaagacataaacatagcaacagacataacc |
44 |
Q |
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| T |
19607490 |
agcacagaagacataaacatagcaacagacataacc |
19607525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 28262809 - 28262705
Alignment:
| Q |
300 |
catggctccactcgcctcaatcacttactcaccaaccgtcatttactaacatctcaaaatgacgacgacgtggcggagactgtccgcctcggagcactta |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||| ||| |
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| T |
28262809 |
catggctccactcgcctcaatcacttactcaccaaccgtcatttactcacatctcaaaatgac---gacgtggcagaaactgtccgcctcggcgcagtta |
28262713 |
T |
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| Q |
400 |
ccatggcc |
407 |
Q |
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||||||| |
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| T |
28262712 |
tcatggcc |
28262705 |
T |
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