View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_22 (Length: 422)
Name: NF10994_low_22
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 1750968 - 1750578
Alignment:
| Q |
11 |
cagagaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcc |
110 |
Q |
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| T |
1750968 |
cagagaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcc |
1750869 |
T |
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| Q |
111 |
tcaagctaatcaatttggaattttttaatctagttatgtactcggaataagtacacaacttctaaaagtttgttatttaagtatgaataattttgccaat |
210 |
Q |
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| T |
1750868 |
tcaagctaat-aatttggaattttttaatctagttatgtactcggaataagtacacaacttctaaaagtttgttatttaagtatgaataattttgccaat |
1750770 |
T |
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| Q |
211 |
tttaacagtgaaaacttgttatgtaagttactaaaaattacctagtagaagtatgaatcctctgaccatattatttatgaaggctcaatcagagacatta |
310 |
Q |
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| T |
1750769 |
tttaatagtgaaaacttgttatgtaagttactaaaaattacctag---aagtatgaatcctctgaccatattatttatgaaggctcaatcagagacatta |
1750673 |
T |
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| Q |
311 |
gtgacagcaaattatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaactttagaaggagagtaccaact |
405 |
Q |
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| T |
1750672 |
gtgacagcaaattatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaactttagaaggagagtaccaact |
1750578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 1742299 - 1742193
Alignment:
| Q |
14 |
agaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcattagtccatcctca |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
1742299 |
agaaacatttcagattataaggaataatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtacttattattacatcctca |
1742200 |
T |
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| Q |
114 |
agctaat |
120 |
Q |
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||||||| |
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| T |
1742199 |
agctaat |
1742193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 1756301 - 1756215
Alignment:
| Q |
14 |
agaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactcat |
100 |
Q |
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| T |
1756301 |
agaaacatttcagattataaggaacagtggtgatcccctcaaaattcgaatcaaagcatcaaatggtctatattggcaggtactcat |
1756215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 286 - 405
Target Start/End: Complemental strand, 1755765 - 1755643
Alignment:
| Q |
286 |
tatgaaggctcaatcagagacattagtgacagcaaattat---caaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaaga |
382 |
Q |
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|||||||| || ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
1755765 |
tatgaaggttcgatcagagacattagtgacagctgattatggtcaaggcacaagttgggaagaaagtgacccatcagtatttcgtatgaaaattgtaaga |
1755666 |
T |
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| Q |
383 |
actttagaaggagagtaccaact |
405 |
Q |
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| T |
1755665 |
actttagaaggagagtaccaact |
1755643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 1719716 - 1719634
Alignment:
| Q |
15 |
gaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtact |
97 |
Q |
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| T |
1719716 |
gaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaagcatcaaatggtctattttggcgggtact |
1719634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 1718970 - 1718853
Alignment:
| Q |
288 |
tgaaggctcaatcagagacattagtgacagcaaattatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaacttt |
387 |
Q |
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|||||| |||||| |||||| ||||| ||| |||||||||||||||||||||| || | ||| |||||||| ||| | ||||||||||||| || || |
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| T |
1718970 |
tgaaggttcaatcgaagacatcagtgattgcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacatt |
1718871 |
T |
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| Q |
388 |
agaaggagagtaccaact |
405 |
Q |
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| T |
1718870 |
acaaggagagtaccaact |
1718853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 405
Target Start/End: Complemental strand, 1740308 - 1740191
Alignment:
| Q |
288 |
tgaaggctcaatcagagacattagtgacagcaaattatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaacttt |
387 |
Q |
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|||||| |||||| |||||| ||||| ||| |||||||||||||||||||||| || | ||| |||||||| ||| | ||||||| ||||| || || |
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| T |
1740308 |
tgaaggttcaatcgaagacatcagtgattgcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaaatgtaaacacatt |
1740209 |
T |
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| Q |
388 |
agaaggagagtaccaact |
405 |
Q |
| |
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| |||||||||||||||| |
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| T |
1740208 |
acaaggagagtaccaact |
1740191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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