View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_24 (Length: 395)
Name: NF10994_low_24
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 11663185 - 11662811
Alignment:
| Q |
11 |
cagagaagaaaacctaagttgtcgaatccaaggtcgacgaagaacatcgatgatgatgaacgacaacaaca---tcaacatcaccgatgatatcttaggc |
107 |
Q |
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| T |
11663185 |
cagagaagaaaacctaagtagtcgaatccaaggtcgacgaagaacatcgatgatgatgaacaacaacaacaacatcaacatcaccgatgatatcttaggc |
11663086 |
T |
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| Q |
108 |
gatgaatgggacgaagatttcctcaacagcgttattgaagctgaaaccgatgctatctcttccagtttcaaacccaaccctacaaacccttcttcttctc |
207 |
Q |
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| T |
11663085 |
gatgaatgggacgaagatttcctcaacagcgttattgaagctgaaaccgatgctatctcttccagtttcaaaccccaccctacaaacccttcttcttctt |
11662986 |
T |
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| Q |
208 |
ccacttctttctctaaccatcatcaattcnnnnnnnnnnnnnnnnnnnnnncgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttc |
307 |
Q |
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| T |
11662985 |
ccacttctttctctaaccatcatcaattccaacaacaacaacaacaacaaccgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttc |
11662886 |
T |
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| Q |
308 |
tcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttga |
382 |
Q |
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| T |
11662885 |
tcaaagacctgctcctactcttttcgatactcatgataaagacattgaatttgagcgatttaaggtaattcttga |
11662811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 1015925 - 1015847
Alignment:
| Q |
304 |
tttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttga |
382 |
Q |
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| T |
1015925 |
tttctcaaagacctgctcctacccttttcagttatgatgataaaaacattgaaattgagcaatttaaggtgattcttga |
1015847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 38116313 - 38116245
Alignment:
| Q |
303 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaag |
371 |
Q |
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| T |
38116313 |
ctttctcaaagacctgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaag |
38116245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 45113728 - 45113660
Alignment:
| Q |
303 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaag |
371 |
Q |
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| T |
45113728 |
ctttctcaaagacttgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaag |
45113660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 22776157 - 22776089
Alignment:
| Q |
314 |
acctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttga |
382 |
Q |
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| T |
22776157 |
acctgctcctacccttttcaattatgatgataaaaacatggaatttgagcaatttaaggtgattcttga |
22776089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 31566017 - 31566105
Alignment:
| Q |
284 |
tttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattc |
378 |
Q |
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|||||||||||||| || |||||||||||||| |||| | ||||||||| || ||||||||||| |||||||| ||| ||||| |||||| |
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| T |
31566017 |
tttctcacctcctccagcgctttctcaaagacttgctgccactcttttc------gacgataaagacatcgaatttgatcgacttaagataattc |
31566105 |
T |
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