View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_25 (Length: 392)
Name: NF10994_low_25
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 43012429 - 43012792
Alignment:
| Q |
18 |
aggtaacatatataagtatataacatcaaattaataactaaactaactaacacctatatatcaaagcaagtggaaaactgaactgtgtattgaaaaaagg |
117 |
Q |
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| T |
43012429 |
aggtaacatatataagtatataacatcaaattaataactaaactaactaacacctatatatcaaagcaagtggaaaactgaactgtgtattgaaaaaagg |
43012528 |
T |
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| Q |
118 |
ttacatctatgaatacaaataaccatttacctctcagcagcccatctatcaatccctagttttggcttgtttctgctataaaccacgagttcctgcttct |
217 |
Q |
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| T |
43012529 |
ttacatctatgaatacaaataaccatttacctctcagcagcccatctataaatccctagttttggcttgtttctgctataaaccacgagttcctgcttct |
43012628 |
T |
|
| Q |
218 |
tggtgtcattcactgctttcttagattttttggctccgctgctactactcacaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012629 |
tggtgtcattcactgctttcttagattttttggctccgctgctactactcacaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaa |
43012728 |
T |
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| Q |
318 |
ctgagctaccttgacagcttcttccattttgttctttctcttcttcacattagtcccttctctg |
381 |
Q |
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| T |
43012729 |
ctgagctaccttgacagcttcttccattttgttctttctcttcttcacattagtcccatctctg |
43012792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 18220656 - 18220920
Alignment:
| Q |
21 |
taacatatataagtatataacatcaaattaataactaaactaactaacacctatatatcaaagcaagtggaaaactgaactgtgtattgaaaa-aaggtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
18220656 |
taacatatataagtatataacatcaaattaataactaaactaactaactaacacctattaaaccaagtggaaaactgaactgtgtactgaaaaaaaggtt |
18220755 |
T |
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| Q |
120 |
acatctatgaatacaaataaccatttacctctcagcagcccatctatcaatccctagttttggcttgtttctgctataaaccacgagttcctgcttcttg |
219 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
18220756 |
acatctttaaatacaaataaccatttacctctcagcagcccatctatcaatccatatttttggcttgtttcttctataaaccacaagttcctgcttcttg |
18220855 |
T |
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| Q |
220 |
gtgtcattcactgctttcttagattttttggctccgctgctactactcacaccttgttgattttt |
284 |
Q |
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| T |
18220856 |
gtgtcattcactgctttctcagactttttatccccactgccactactcacaccttggtgattttt |
18220920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 18220918 - 18221030
Alignment:
| Q |
234 |
tttcttagattttttggctccgctgctactactcacaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaactgagctaccttgaca |
333 |
Q |
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||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |
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| T |
18220918 |
tttcttagactttttggccacgctgctactacttacaccttgttgatttttgttgcattgacgagtcaccctctgtacctcaaaaggagctaccttcaca |
18221017 |
T |
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| Q |
334 |
gcttcttccattt |
346 |
Q |
| |
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|||||||||||| |
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| T |
18221018 |
acttcttccattt |
18221030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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