View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_26 (Length: 383)
Name: NF10994_low_26
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 35915181 - 35915537
Alignment:
| Q |
16 |
atcatgatatgatattagttttatagtgaatacagagaaagnnnnnnngaatgcataggctgaccactcaaccaaaataatgtgtcaaaaaagtggattg |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915181 |
atcatgatatgatataagttttatagtgaatacagagaaagaaaaaaagaatgcataggctgaccactcaaccaaaataatgtgtcaaaaaagtggattg |
35915280 |
T |
|
| Q |
116 |
attttgtggttagaatgttgcagccaaaattcaacctatcctgctgttgtctctgccaaagacaaaagtagttccccagtttactgccacgtaaaacctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915281 |
attttgtggttagaatgttgcagccaaaattcaacctatcctgctgttgtctctgccaaagacaaaagtagttccccagtttactgccacgtaaaacctg |
35915380 |
T |
|
| Q |
216 |
ttcctccagctcagcacacgtgtaagatacgcagaacgccatatcagccagctgacaaaaccagcaagtgacaatccctttgcatcctataacacaagat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915381 |
ttcctccagctcagcacacgtgtaagatacgcagaacgccatatcagccagctgacaaaaccagcaagtgacaatccctttgcatcctataacacaagat |
35915480 |
T |
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| Q |
316 |
acattttatagcacaaaatcagaagctgtcttttgaatttgccaatttctgtttctt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
35915481 |
acattttatagcacaaaatcagaagctgtcttttgagtttgctaatttctgtttctt |
35915537 |
T |
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