View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_27 (Length: 373)

Name: NF10994_low_27
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_27
NF10994_low_27
[»] chr4 (3 HSPs)
chr4 (154-355)||(28110915-28111116)
chr4 (2-153)||(40383063-40383213)
chr4 (287-347)||(33131359-33131419)
[»] chr3 (2 HSPs)
chr3 (154-351)||(24837137-24837334)
chr3 (172-240)||(30871450-30871518)
[»] chr8 (1 HSPs)
chr8 (154-355)||(4028433-4028634)
[»] chr2 (1 HSPs)
chr2 (154-355)||(34326358-34326558)
[»] chr7 (1 HSPs)
chr7 (164-209)||(35052330-35052375)
[»] chr1 (1 HSPs)
chr1 (13-63)||(22793016-22793064)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 154 - 355
Target Start/End: Original strand, 28110915 - 28111116
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28110915 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 28111014  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111015 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 28111114  T
Q  354 ct 355  Q
    ||    
T  28111115 ct 28111116  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 40383063 - 40383213
Alignment:
Q  2 tctgtttatggtttaataattcaagttatcactaatataggaagcatctttgttatttagcataagaagtatcgttttatgtaccttttgtgtataacta 101  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383063 tctgtttatagtttaataattcaagttatcactaacataggaagcatcttt-ttatttagcataagaagtatcgttttatgtaccttttgtgtataacta 40383161  T
Q  102 ttattaatttannnnnnngaatatataaatgtatcaaatactctctccgtct 153  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||    
T  40383162 ttattaatttatttttttgaatatataaatgtatcaaatactctctccgtct 40383213  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 33131359 - 33131419
Alignment:
Q  287 ggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacc 347  Q
    |||||||| |||||||| | | | |||||||||||||| ||||| |||||||| |||||||    
T  33131359 ggattccatgtccattctttaaataaacaaaccggcaaattcaagcgactcaatacccacc 33131419  T

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Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 154 - 351
Target Start/End: Complemental strand, 24837334 - 24837137
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24837334 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 24837235  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctcca 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837234 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctcca 24837137  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 30871518 - 30871450
Alignment:
Q  172 agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca 240  Q
    ||||| |||||||||||||| |||  | |||||||||| | ||||||||||| | ||||||| ||||||    
T  30871518 agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgccca 30871450  T

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Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 154 - 355
Target Start/End: Complemental strand, 4028634 - 4028433
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | |||   ||| || |||     
T  4028634 ggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgcataacagacccc 4028535  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 353  Q
    |||| ||||||||||||||||| |||| |||| |||||||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||    
T  4028534 aaaaaccaccattaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaaaccggcaaattcaagcggctcaaaacccatctccatg 4028435  T
Q  354 ct 355  Q
    ||    
T  4028434 ct 4028433  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 154 - 355
Target Start/End: Complemental strand, 34326558 - 34326358
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||||  ||| || |||     
T  34326558 ggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacgtaacagacccc 34326459  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 353  Q
    |||| ||||||||||||||||| |||| ||||||||||||| |||||||  || ||||||||||||||||| ||||| || |||||||||||||||||||    
T  34326458 aaaaaccaccattaccgcaccagacactcttgtggattccaagtccatttgtagtacaaacaaaccggcaa-ttcaagcggctcaaaacccacctccatg 34326360  T
Q  354 ct 355  Q
    ||    
T  34326359 ct 34326358  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
Q  164 agcaggacagcaatgaggctgtcatatactcctagccaaaacagca 209  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35052330 agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca 35052375  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 22793016 - 22793064
Alignment:
Q  13 tttaataattcaagttatcactaatataggaagcatctttgttatttagca 63  Q
    |||||||||||||||| |||  || ||||||||||||||||||||||||||    
T  22793016 tttaataattcaagttttca--aacataggaagcatctttgttatttagca 22793064  T

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