View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_29 (Length: 364)

Name: NF10994_low_29
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_29
NF10994_low_29
[»] chr6 (8 HSPs)
chr6 (1-351)||(2865874-2866224)
chr6 (1-351)||(2860495-2860845)
chr6 (1-343)||(2885064-2885406)
chr6 (1-322)||(2909910-2910231)
chr6 (1-322)||(2842113-2842434)
chr6 (1-322)||(2833186-2833507)
chr6 (1-301)||(14577872-14578172)
chr6 (1-262)||(2828815-2829076)
[»] chr7 (1 HSPs)
chr7 (81-211)||(1800792-1800922)
[»] chr4 (2 HSPs)
chr4 (114-191)||(53395497-53395574)
chr4 (1-190)||(44396056-44396245)
[»] chr5 (1 HSPs)
chr5 (139-202)||(8043817-8043880)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2865874 - 2866224
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2865874 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 2865973  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2865974 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccgcgtttccaagcctttccaact 2866073  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2866074 ttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 2866173  T
Q  301 gcgcaaaatttgtgtgactccatcctgagatccaccaacaaccgctattgt 351  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||    
T  2866174 gcgcaaaatttgtgtgactccaccccgacatccaccaacaaccgctattgt 2866224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2860495 - 2860845
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  2860495 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtctttttaactcattgttatccttgacagttgttaattcaagatcatacac 2860594  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860595 gtcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 2860694  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860695 ttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 2860794  T
Q  301 gcgcaaaatttgtgtgactccatcctgagatccaccaacaaccgctattgt 351  Q
    | |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2860795 gtgcaaaatttgtgtgactccaccctgacatccaccaacaaccgctattgt 2860845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 2885064 - 2885406
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  2885064 caatatcttcaataacgataactgatttgcttgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagtggttaattctagatcatatac 2885163  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2885164 atcgtagttcatgaaatttgcaatagccgatatcatggtagatttcccagttcctggtggaccataaagtagataaccccgtttccaagcctttccaact 2885263  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2885264 ttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 2885363  T
Q  301 gcgcaaaatttgtgtgactccatcctgagatccaccaacaacc 343  Q
    | |||||||||||||||||||| || || ||||||||||||||    
T  2885364 gtgcaaaatttgtgtgactccaccccgacatccaccaacaacc 2885406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 2909910 - 2910231
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    ||||||| |||||||| ||||  ||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||| ||    
T  2909910 caatatcgtcaataactataatcgatttactcgatgtctcaatcaaaagtcttttcaactcatagttatccttgacaattgttaattgaagatcataaac 2910009  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
     || |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  2910010 gtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacgcctttccaact 2910109  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2910110 ttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttccttcttctccggttccatagcaagtgtttcaaaccttgcagggt 2910209  T
Q  301 gcgcaaaatttgtgtgactcca 322  Q
    || ||||| |||||||||||||    
T  2910210 gctcaaaagttgtgtgactcca 2910231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2842434 - 2842113
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  2842434 caatatcttcaataacaataatcgatttactcgacgtctcaatcaaaagtcttttcaactcattgttatccttgacaattgttaattcaagatcatacac 2842335  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
    ||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||| |||||| | ||||||||||| ||||||||||| |||||||||    
T  2842334 atcatagttcatgaaattagcaatagccgatatcatggtagatttaccggttcctggaggaccaaaaagtagataaccacgtttccaagcttttccaact 2842235  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||| |  ||||||| ||||||||||||||| ||||| ||||    
T  2842234 ttagcataatactctttccctttcttgaatttaacaagatcatttagaatctcttctttcttttttggttccaaagcaagtgtttcaaaacttgccgggt 2842135  T
Q  301 gcgcaaaatttgtgtgactcca 322  Q
    || ||||| |||||||||||||    
T  2842134 gctcaaaagttgtgtgactcca 2842113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 2833186 - 2833507
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    |||||||||| ||||| ||||  ||||| || ||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||    
T  2833186 caatatcttcgataactataatcgatttacttgacgtttcaatcaaaagtctcttcaactcattgttatccttaacagttgttaattcaagatcatacac 2833285  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
    ||| ||||||||| ||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  2833286 atcatagttcatgtaatttgctatagctgatatcatagtagattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaact 2833385  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||  ||||||| |||||| || ||||||||||| || ||| |||| |||||||| |    
T  2833386 ttagcataatactctttacctttcttgaacttaagaagatcatttaaaatctcttgtttcttttctggttccatagctagggttccaaatcttgcaggat 2833485  T
Q  301 gcgcaaaatttgtgtgactcca 322  Q
    || ||||| |||||||| ||||    
T  2833486 gctcaaaagttgtgtgattcca 2833507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 14578172 - 14577872
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    ||||||| ||||| || |||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  14578172 caatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtcttttcaactcattgttatccttgatagttgttaattcaagatcataaac 14578073  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
     ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| |||||  | |||| |||||| |||||||||||||||||||||    
T  14578072 gtcgtagttcataaaatttgcaatagccgatatcatggtagattttccggttcctggaggaccgaaaagtaaataaccgcgtttccaagcctttccaact 14577973  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaaccttgcagggt 300  Q
    |||||||| |||||||| |||  |||||| |||| |||||||| ||| ||||||||||||||||  |  ||||||||||||||||| |||||||||||||    
T  14577972 ttagcatagtactctttacctgccttgaacttaacaagatcgtctattatctcttctttcttctttgcatccatagcaagtgtttcgaaccttgcagggt 14577873  T
Q  301 g 301  Q
    |    
T  14577872 g 14577872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 2829076 - 2828815
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    |||||||||||||||| ||||  ||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||| ||    
T  2829076 caatatcttcaataactataatcgatttactcgacgtctcgatcaaaagtcttttcaactcattgttattcttgatagttgttaactcaagatcatacac 2828977  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaact 200  Q
    ||| || ||||||||||| |||||||| |||||||| |||||||| |||||||| || |||||| | ||||||||||| |||||||||||||| || |||    
T  2828976 atcataattcatgaaattagcaatagctgatatcatcgtagattttccagttccaggaggaccaaaaagtagataaccacgtttccaagccttcccgact 2828877  T
Q  201 ttagcataatactctttccctttcttgaatttaataagatcgtttatgatctcttctttctt 262  Q
    |||| ||| |||||||| ||| | ||||| |||| |||||| ||||| || |||||||||||    
T  2828876 ttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttctt 2828815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 1800922 - 1800792
Alignment:
Q  81 gttaattcaagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataacccc 180  Q
    ||||||||||||||||| ||||| |||||||||||||| || ||||| | |||||| |||||||| || |||||||| |||||||| |||| |||||| |    
T  1800922 gttaattcaagatcataaacatcatagttcatgaaattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgc 1800823  T
Q  181 gtttccaagcctttccaactttagcataata 211  Q
    ||||||||||||| || | ||| ||||||||    
T  1800822 gtttccaagccttaccgatttttgcataata 1800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 53395574 - 53395497
Alignment:
Q  114 aaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcc 191  Q
    ||||| || |||||||  |||||| ||||||| ||||||||||| |||||||| || |||||||| | ||||||||||    
T  53395574 aaattagccatagcagcaatcatgctagattttccagttcctggaggaccataaagaagataacctcttttccaagcc 53395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 44396245 - 44396056
Alignment:
Q  1 caatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtgttttcaactcattgttatccttgacagttgttaattcaagatcatatac 100  Q
    |||| ||||||||||| |||| ||| || || |  ||||||||||||||  |  |||||||| | |||||||| || | |||||| || | |||||| ||    
T  44396245 caatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtattatccttcactgctgttaactctaaatcataaac 44396146  T
Q  101 atcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtttccaagc 190  Q
    ||| ||   ||  ||||| || |||||||  ||||| || ||||| ||||| ||||| |||||| | |||| |||||||| |||||||||    
T  44396145 atcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagc 44396056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 8043880 - 8043817
Alignment:
Q  139 tagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaacttt 202  Q
    ||||||||||||||||||| |||||||| |  | |||||| |||||||||||| | ||||||||    
T  8043880 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 8043817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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