View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_3 (Length: 712)

Name: NF10994_low_3
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_3
NF10994_low_3
[»] chr2 (19 HSPs)
chr2 (1-695)||(8403633-8404324)
chr2 (1-189)||(8429488-8429676)
chr2 (1-105)||(8376193-8376297)
chr2 (145-224)||(8368104-8368183)
chr2 (145-224)||(8401227-8401306)
chr2 (145-224)||(8422804-8422883)
chr2 (159-213)||(8411867-8411921)
chr2 (159-213)||(8433965-8434019)
chr2 (159-211)||(8376087-8376139)
chr2 (1-105)||(8395879-8395983)
chr2 (1-105)||(8405589-8405693)
chr2 (159-211)||(8431018-8431070)
chr2 (30-105)||(8430889-8430964)
chr2 (168-227)||(8459649-8459708)
chr2 (163-212)||(8416952-8417001)
chr2 (1-105)||(8411709-8411813)
chr2 (1-105)||(8433807-8433911)
chr2 (30-105)||(8416822-8416897)
chr2 (159-209)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (31-204)||(55335978-55336151)
chr4 (1-205)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (1-105)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Original strand, 8403633 - 8404324
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8403633 gattttgaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctt 8403732  T
Q  101 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 200  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403733 tctcttcaataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 8403832  T
Q  201 aaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgatcctatagctgcaattcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8403833 aaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgaccctatagctgcaattcct 8403932  T
Q  301 gttaacaaaggtccaaaaattgctaaacccttgttaatctttgatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaa 400  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403933 gttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaa 8404032  T
Q  401 ttacctcattcatttcatcttccaattccaaattccacccattattgctctcattattaatctccatcttattgttcaatccagtaattttctttggaca 500  Q
    ||||||| |||||||||| |||||| ||||||||||| |||||||| | |||   |||||||||||||||| ||||| ||| ||| ||||||||| ||||    
T  8404033 ttacctccttcatttcattttccaactccaaattccatccattattcccctc---attaatctccatcttactgttctatctagtcattttcttttgaca 8404129  T
Q  501 tggccaccacctagatgcttcaaatttggaaggaaatttcgcaatcattgcacctcctaacaaaggaagtggataggctttatcaagagccaaaaccttc 600  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8404130 tggccaccacatagatgcttcaaatttggatggaaatttctcaatcattgcacctcctaataaaggaagtggataggctttatcaagagccaaaaccttc 8404229  T
Q  601 tcaattgcatccctcacatcatcttcactgtgattattattaccaagtgatagtttggtttggatttgcctacgaagttgtttaaagagttttgt 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8404230 tcaattgcatccctcacatcatcttcactgtgattattattaccaagtgatagtttggtttggatttgtctacgaagttgtttaaagagttttgt 8404324  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 8429488 - 8429676
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||||    
T  8429488 gatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatctt 8429587  T
Q  101 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgt 189  Q
    | ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  8429588 tatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcataccaacttgt 8429676  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||||||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  101 tctct 105  Q
    |||||    
T  8376197 tctct 8376193  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 8368104 - 8368183
Alignment:
Q  145 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 224  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8368104 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8368183  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 8401306 - 8401227
Alignment:
Q  145 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 224  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8401306 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8401227  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 8422883 - 8422804
Alignment:
Q  145 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 224  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8422883 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8422804  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8411867 - 8411921
Alignment:
Q  159 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 213  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8411921  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8433965 - 8434019
Alignment:
Q  159 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 213  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8434019  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 8376139 - 8376087
Alignment:
Q  159 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 211  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8376087  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8395983 - 8395879
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8395983 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8395884  T
Q  101 tctct 105  Q
    |||||    
T  8395883 tctct 8395879  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8405589 - 8405693
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8405589 gattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8405688  T
Q  101 tctct 105  Q
    |||||    
T  8405689 tctct 8405693  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 8431018 - 8431070
Alignment:
Q  159 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 211  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  30 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 105  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 8459708 - 8459649
Alignment:
Q  168 ctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaaagc 227  Q
    |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||    
T  8459708 ctcaaaaaccataccaacttgccctccatgttctaatgtgttaacaacagttgccaaagc 8459649  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 8416952 - 8417001
Alignment:
Q  163 tacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaac 212  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaac 8417001  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  101 tctct 105  Q
    |||||    
T  8411809 tctct 8411813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  101 tctct 105  Q
    |||||    
T  8433907 tctct 8433911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  30 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 105  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 8405747 - 8405797
Alignment:
Q  159 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 209  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 8405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 55335978 - 55336151
Alignment:
Q  31 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 130  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  131 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 204  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 55330516 - 55330720
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||| |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  101 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 200  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttc 55330715  T
Q  201 aaaag 205  Q
    |||||    
T  55330716 aaaag 55330720  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  1 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 100  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  129 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 30  T
Q  101 tctct 105  Q
    |||||    
T  29 tctct 25  T

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