View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_30 (Length: 351)

Name: NF10994_low_30
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_30
NF10994_low_30
[»] chr5 (3 HSPs)
chr5 (14-172)||(10548381-10548541)
chr5 (170-297)||(10548181-10548308)
chr5 (207-284)||(20319536-20319612)
[»] scaffold0590 (2 HSPs)
scaffold0590 (170-297)||(4983-5112)
scaffold0590 (198-270)||(7689-7761)
[»] chr1 (7 HSPs)
chr1 (209-297)||(18136423-18136512)
chr1 (176-297)||(31230307-31230426)
chr1 (222-297)||(52946202-52946277)
chr1 (215-297)||(11398283-11398365)
chr1 (222-291)||(52935165-52935234)
chr1 (222-291)||(52942800-52942869)
chr1 (252-297)||(52938570-52938615)
[»] chr7 (2 HSPs)
chr7 (222-297)||(47762062-47762137)
chr7 (241-294)||(25998371-25998424)
[»] chr4 (4 HSPs)
chr4 (222-297)||(40225492-40225567)
chr4 (207-284)||(5373890-5373966)
chr4 (215-284)||(17225256-17225324)
chr4 (170-215)||(8332561-8332606)
[»] chr2 (1 HSPs)
chr2 (218-297)||(42735269-42735350)
[»] chr6 (2 HSPs)
chr6 (170-272)||(27368815-27368917)
chr6 (170-272)||(27459162-27459264)
[»] chr3 (2 HSPs)
chr3 (215-276)||(30174411-30174472)
chr3 (215-286)||(7051110-7051180)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 10548541 - 10548381
Alignment:
Q  14 agagaaaatataacaaaagtgaaaacgcgggaaacatgatggaaaaaggctttgatgaaacaataggtttaatttgtgttagattagatggtgggatttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10548541 agagaaaatataacaaaagtgaaaacgcgggaaacatgatggaaaaaggctttgatgaaacaatagctttaatttgtgttagattagatggtgggatttg 10548442  T
Q  114 agtattttagttagacatgtgtg--tgtatatgtaatggtactaaaatggatataaggaaa 172  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  10548441 agtattttagttagacatgtgtgtatatatatgtaatggtactaaaatggatataaggaaa 10548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 10548308 - 10548181
Alignment:
Q  170 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatt 269  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  10548308 aaaatgagagaagaggttagaagaagaatgttgacatcacacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctatt 10548209  T
Q  270 tcccataatgccccttctaactctaaga 297  Q
    | ||||||||||||||||||||||||||    
T  10548208 ttccataatgccccttctaactctaaga 10548181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 20319536 - 20319612
Alignment:
Q  207 cacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgcccct 284  Q
    |||||||||| |||||||||||||| | |||||||| |||||| |||||||| |||| |||||||||||| |||||||    
T  20319536 cacacatatttcatgcttatttcctggacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 20319612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 4983 - 5112
Alignment:
Q  170 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatt--taaaagggtccatattccta 267  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  4983 aaaatgagagaagaggttagaagaagaatgttgacatcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattccta 5082  T
Q  268 tttcccataatgccccttctaactctaaga 297  Q
    ||||||||||||||||||||||||||||||    
T  5083 tttcccataatgccccttctaactctaaga 5112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 7689 - 7761
Alignment:
Q  198 tgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatattcctattt 270  Q
    |||||||| || ||||||| ||||||||||| ||||  ||||||| |||||| |||||| |||||||||||||    
T  7689 tgttgacatcagacatatttcatgcttattttcttgatttttctcgtatttataagggttcatattcctattt 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 18136512 - 18136423
Alignment:
Q  209 cacatattccatgcttatttccttggctttt-ctcatatttaaaagggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18136512 cacatatttcatgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaaga 18136423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 31230307 - 31230426
Alignment:
Q  176 agagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccat 275  Q
    |||||||||||||| || |||||||||||| |||| || ||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||||||    
T  31230307 agagaagaggttaggaggagaatgttgacatcaca-at-ttccatgcttattccattggtttttctcatatttataagggtccatattcctatttcccat 31230404  T
Q  276 aatgccccttctaactctaaga 297  Q
    || |||||||||||||||||||    
T  31230405 aacgccccttctaactctaaga 31230426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 52946277 - 52946202
Alignment:
Q  222 cttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaaga 52946202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 11398283 - 11398365
Alignment:
Q  215 ttccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  11398283 ttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccacttctaactctaaga 11398365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 52935234 - 52935165
Alignment:
Q  222 cttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaact 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaact 52935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 52942869 - 52942800
Alignment:
Q  222 cttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaact 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaact 52942800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 52938615 - 52938570
Alignment:
Q  252 agggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52938615 agggtccatattcctatttcccataatgccccttctaactctaaga 52938570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 47762137 - 47762062
Alignment:
Q  222 cttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  47762137 cttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccccttctaactctaaga 47762062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 25998371 - 25998424
Alignment:
Q  241 tcatatttaaaagggtccatattcctatttcccataatgccccttctaactcta 294  Q
    ||||||||| | ||||| |||||||||||| |||||||||  ||||||||||||    
T  25998371 tcatatttatacgggtctatattcctattttccataatgcatcttctaactcta 25998424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 40225492 - 40225567
Alignment:
Q  222 cttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgccccttctaactctaaga 40225567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 5373890 - 5373966
Alignment:
Q  207 cacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgcccct 284  Q
    ||||||| || |||||||||||||||| |||||||| |||||| |||||||| |||| |||||||||||| |||||||    
T  5373890 cacacatttttcatgcttatttccttgacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 5373966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 17225256 - 17225324
Alignment:
Q  215 ttccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgcccct 284  Q
    ||||||||||| |||||||||||||||| |||||| |||||||| |||| |||||||||||| |||||||    
T  17225256 ttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 17225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 8332606 - 8332561
Alignment:
Q  170 aaaatgagagaagaggttagaagaagaatgttgacaacacacatat 215  Q
    ||||||||||||| |||||| |||||||| |||||| |||||||||    
T  8332606 aaaatgagagaagcggttaggagaagaatattgacatcacacatat 8332561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 42735350 - 42735269
Alignment:
Q  218 catgcttatttccttggcttttctcatatttaaaag--ggtccatattcctatttcccataatgccccttctaactctaaga 297  Q
    |||||||||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  42735350 catgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaaga 42735269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 27368917 - 27368815
Alignment:
Q  170 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttc-cttggcttttctcatatttaaaagggtccatattcctat 268  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||||| |||||| ||| ||||| |||| |||    
T  27368917 aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggc-tttctcgtatttataagagtccacattcatat 27368819  T
Q  269 ttcc 272  Q
    ||||    
T  27368818 ttcc 27368815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 27459264 - 27459162
Alignment:
Q  170 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttc-cttggcttttctcatatttaaaagggtccatattcctat 268  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||||| |||||| ||| ||||| |||| |||    
T  27459264 aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggc-tttctcgtatttataagagtccacattcatat 27459166  T
Q  269 ttcc 272  Q
    ||||    
T  27459165 ttcc 27459162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 30174411 - 30174472
Alignment:
Q  215 ttccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccata 276  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||  ||||||||    
T  30174411 ttccatgcttatttccttggcttttctcttatttataaggatccatattccttattcccata 30174472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 7051180 - 7051110
Alignment:
Q  215 ttccatgcttatttccttggcttttctcatatttaaaagggtccatattcctatttcccataatgccccttc 286  Q
    |||||| ||||||||||||| ||| ||| |||||| |||||||||||||||| ||||||||| | |||||||    
T  7051180 ttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttc 7051110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University