View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_33 (Length: 336)
Name: NF10994_low_33
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 45650447 - 45650137
Alignment:
| Q |
15 |
atcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcct |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45650447 |
atcatgcacaactggaaattcaattagtactgacagcagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcct |
45650348 |
T |
|
| Q |
115 |
ggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggtt |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45650347 |
ggacattgcacaggtggcatgaaactttctgttaaagttaaggcttcttctagtgcttcttctgctccttctgcaacaccatcgccatcagggaaaggtt |
45650248 |
T |
|
| Q |
215 |
caccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttgctttattttt |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45650247 |
caccttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaattgttgctttattttt |
45650148 |
T |
|
| Q |
315 |
cactgtttcat |
325 |
Q |
| |
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||||||||||| |
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| T |
45650147 |
cactgtttcat |
45650137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 45643183 - 45642881
Alignment:
| Q |
15 |
atcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcct |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
45643183 |
atcatgcacaactggaaattcaattagtacagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcct |
45643084 |
T |
|
| Q |
115 |
ggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggtt |
214 |
Q |
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| T |
45643083 |
ggacattgcacatttggcatgaaactctttgttaaggttaagccttctt---------ctgctgctccttctgcaacaccattaccatcagggaaaggtt |
45642993 |
T |
|
| Q |
215 |
caccttccgatggcacccctgctg---caaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttgctttatt |
311 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||| ||||||||| || |
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| T |
45642992 |
caccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagctactaccatctcaccaactgttgctttctt |
45642893 |
T |
|
| Q |
312 |
tttcactgtttc |
323 |
Q |
| |
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|||||||||||| |
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| T |
45642892 |
tttcactgtttc |
45642881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 45703141 - 45703282
Alignment:
| Q |
15 |
atcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcct |
114 |
Q |
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|
||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
45703141 |
atcatgcacaactagaaattcaattagtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcct |
45703240 |
T |
|
| Q |
115 |
ggacattgcaca---ggtggcatgaaactttctgttaaggtt |
153 |
Q |
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| |||||||| | |||||||||||||| |||||||||||| |
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| T |
45703241 |
gtacattgcataagtggtggcatgaaactctctgttaaggtt |
45703282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 45886954 - 45887094
Alignment:
| Q |
16 |
tcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctg |
115 |
Q |
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|
|||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
45886954 |
tcatgcacaactagaaattcaattagtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctg |
45887053 |
T |
|
| Q |
116 |
gacattgcaca---ggtggcatgaaactttctgttaaggtt |
153 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||||||| |
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| T |
45887054 |
tacattgcataagtggtggcatgaaactctctgttaaggtt |
45887094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 45703423 - 45703562
Alignment:
| Q |
186 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
285 |
Q |
| |
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|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
45703522 |
T |
|
| Q |
286 |
agtatctcaccaaatgttgctttatttttcactgtttcat |
325 |
Q |
| |
|
|||||||||||| |||||| || ||||| | |||||||| |
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| T |
45703523 |
tgtatctcaccaattgttgccttcttttttattgtttcat |
45703562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 45887229 - 45887368
Alignment:
| Q |
186 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
285 |
Q |
| |
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|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
45887328 |
T |
|
| Q |
286 |
agtatctcaccaaatgttgctttatttttcactgtttcat |
325 |
Q |
| |
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|||||||||||| |||||| || ||||| | |||||||| |
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| T |
45887329 |
tgtatctcaccaattgttgccttcttttttattgtttcat |
45887368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 45703307 - 45703371
Alignment:
| Q |
157 |
tcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
221 |
Q |
| |
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||||||||| | || |||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
45703307 |
tcttcttcttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45703371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 45887132 - 45887177
Alignment:
| Q |
176 |
ctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
221 |
Q |
| |
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||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
45887132 |
ctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45887177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 1193586 - 1193678
Alignment:
| Q |
236 |
ctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttg---ctttatttttcactgtttcat |
325 |
Q |
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||||||| ||||||||||||||| | || ||||||||||||||| ||||||| ||| ||||| ||||| |||||||||||| |||||||| |
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| T |
1193586 |
ctgcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcat |
1193678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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