View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_35 (Length: 331)
Name: NF10994_low_35
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 43375357 - 43375666
Alignment:
| Q |
1 |
tcactgcaggaattggtcccatgattgttttcactccatcttccaaccattccaacttcataccaagttcaccagccctgcaaatatttcacaatcaaag |
100 |
Q |
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| T |
43375357 |
tcactgcaggaattggtcccatgattgttttcactccatcttccaaccattccaacttcataccaagttcaccagccctgcaaatatttcacaatcaaag |
43375456 |
T |
|
| Q |
101 |
tttnnnnnnnnnnnnnnnngtccacaactattatctgagctgcaacattatagcttttttatgtctatatctgaccacagcataagccgtatttgaccat |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43375457 |
tttaaaaaaaaaaaa----gtccacaactattatctgagctgcaacattatagcttttttatgtctatatctgaccacagcataagccgtatttgaccat |
43375552 |
T |
|
| Q |
201 |
gattacaattgtaacctaacataatttaagtctcgaaccaagtaccacaaggttgacataattcaaaaccttgttcaaaatatcaacatagcatgcactt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43375553 |
gattacaattgtaacctaacataatttaagtcccgaaccaagtaccacaaggttgacataattcaaaaccttgttcaaaatatcaacatagcatgcactt |
43375652 |
T |
|
| Q |
301 |
ttttggttacatat |
314 |
Q |
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|||||||||||||| |
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| T |
43375653 |
ttttggttacatat |
43375666 |
T |
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