View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_39 (Length: 309)

Name: NF10994_low_39
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_39
NF10994_low_39
[»] chr7 (1 HSPs)
chr7 (1-291)||(41770660-41770950)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 41770660 - 41770950
Alignment:
Q  1 aaaatgctgattatgctgctgagaaagccagagaaacgaaggacacaactgcaaataaagccggggaatacacaaactatgctgcagagaaagcgaggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41770660 aaaatgctgattatgctgctgagaaagccagagaaacgaaggacacaactgcaaataaagccggggaatacacaaactatgctgcagagaaagcgaggga 41770759  T
Q  101 ggcaaaagatactactgcgaataaagcaggggagtatacaaactatgcggcagagaaggcgaaggaagcgaaggatgcaacggtgaacaaagctggggag 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41770760 ggcaaaagataccactgcgaataaagcaggggagtatacaaactatgctgcagagaaggcgaaggaagcgaaggatgcaacggtgaacaaagctggggag 41770859  T
Q  201 tatacgaactatgctgctgataaggcgaagcaggcaaaggatgcaacggtgcagaaggctggagaagctaaagatgctacagtgaacaaag 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41770860 tatacgaactatgctgctgataaggcgaagcaggcaaaggatgcaacggtgcagaaggctggagaagctaaagatgctacagtgaacaaag 41770950  T

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