View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_40 (Length: 304)
Name: NF10994_low_40
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 35891346 - 35891616
Alignment:
| Q |
19 |
gtcaaagaattagacgcttctggaaagttagtagaaagacaaacgagtcacctttctccaacaactctgccagtatcagatggacgcttaattcccacaa |
118 |
Q |
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| T |
35891346 |
gtcaaagaattagacgcttctggaaagttagtagaaagacaaacgagtcacctttctccaacaactccgccagtgtcagatggacgcttaattcccacaa |
35891445 |
T |
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| Q |
119 |
caactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgatta |
218 |
Q |
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| T |
35891446 |
caactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgatta |
35891545 |
T |
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| Q |
219 |
gttttggtgcatatgttgtatatagaatcatgatatgatattccaagaaaccataattgtttccttttctt |
289 |
Q |
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| T |
35891546 |
gttttggtgcatatgttgtatatagaatcatgatatgatattccaagaaaacataattgtttccttttctt |
35891616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 35919891 - 35919967
Alignment:
| Q |
116 |
caacaactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaatttt |
192 |
Q |
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| T |
35919891 |
caacaactagtacggcaaataatcaggacatgaagtctccttctgtagaagacatttgaaattaagtgtctaatttt |
35919967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 35556088 - 35556012
Alignment:
| Q |
115 |
acaacaactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaatttt |
192 |
Q |
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| T |
35556088 |
acaaccactagtactgcgaatgatcaggacatgaagtctcctt-tgtagaagacacttgaaattaagtgtctaatttt |
35556012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 21445744 - 21445875
Alignment:
| Q |
155 |
cttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgtatatagaatcatgatat |
254 |
Q |
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| T |
21445744 |
cttctggagagaacacgtgaaattaagtgtctaattttctataa--ctaaaaagttcttgattaactttggtgtataggttttgtaaagactcatgaaat |
21445841 |
T |
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| Q |
255 |
gatattccaagaaaccataattgtttccttttctt |
289 |
Q |
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| T |
21445842 |
gatattccaa-aaaccataattgtttccttttctt |
21445875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 289
Target Start/End: Original strand, 29624270 - 29624419
Alignment:
| Q |
140 |
aggacttgaagtctccttctgtagaggagacttgaaatt-aagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgta |
238 |
Q |
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||||| |||||||||||||||||||||| ||||||| || |||||||||| | |||||| || | ||||| |||| || | ||| ||| |||||| |
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| T |
29624270 |
aggacatgaagtctccttctgtagaggacacttgaaggacaaatgtctaatttcctgtaaaaccgaagagttcttcattaattctagtgtataggttgta |
29624369 |
T |
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| Q |
239 |
tatagaatcatgatatgatattccaagaaaccataattgtttccttttctt |
289 |
Q |
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| T |
29624370 |
tatagactcatgaaatgatattccaa-aaaccgtaattgtttccttttctt |
29624419 |
T |
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