View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_43 (Length: 286)
Name: NF10994_low_43
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_43 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 17446126 - 17445851
Alignment:
| Q |
11 |
cagagaattacacaaaattcagtcctcatatattcaatacagatacagatcagtaaaatgtgtccgcgcctaatcaacattcggttattatgaagaacca |
110 |
Q |
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| T |
17446126 |
cagagaattacacaaaattcagtcctcatgtattcaatacagatacagatcggtaaaatgtgtccgcgcctaatcaacattcggttattatgaagaacca |
17446027 |
T |
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| Q |
111 |
gatttctgtgtcaaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaagcctagtaagctatgcagatatgg |
210 |
Q |
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| T |
17446026 |
gatttctgtttcaaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaagcctagtaagctatgcagatatgg |
17445927 |
T |
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| Q |
211 |
ctgtttctttttgaactgtttctccgggagtgaacctaacaaaacgccgcactttaaactctccactagcagctat |
286 |
Q |
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| T |
17445926 |
ctgtttctttttgaactgtttctccgggagtgaacctaacaaaacgccgcactttaaactctccaatagcagctat |
17445851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 33414075 - 33414333
Alignment:
| Q |
11 |
cagagaattacacaaaattcagtcctcatatat--tcaatacagatacagatcagtaaaatgtgtccgcgcctaatcaacattcggttattatgaagaac |
108 |
Q |
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| T |
33414075 |
cagagaattacacaaaattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaag |
33414174 |
T |
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| Q |
109 |
cagatttctgtgtcaaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaagcctagtaagctatgcagatat |
208 |
Q |
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| T |
33414175 |
cagatttctgtttcaaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaacctagtaagctatgctggtat |
33414274 |
T |
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| Q |
209 |
ggctgtttctttttgaactgtttctccgggagtgaacctaacaaaacgccgcactttaa |
267 |
Q |
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| T |
33414275 |
ggctgtttctttttgaactgtttctccgagagtgaaccgaacaaaacgccgcactttaa |
33414333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 33351174 - 33351430
Alignment:
| Q |
15 |
gaattacacaaaattcagtcctca--tatattcaatacagatacagatcagtaaaatgtgtccgcgcctaatcaacattcggttattatgaagaaccaga |
112 |
Q |
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| T |
33351174 |
gaattacacaaaattcagtcctcaagtaaattcaatac---tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaaga |
33351270 |
T |
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| Q |
113 |
tttctgtgtc--aaaattgatctcactctgccgcatacttcttcctatgaaaatgcaa---caaatacttgtcttgaaagcctagtaagctatgcagata |
207 |
Q |
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| T |
33351271 |
tttctgttttcaaaaattgatctcactccgcagcatacttcttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctatgccggta |
33351370 |
T |
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| Q |
208 |
tggctgtttctttttgaactgtttctccgggagtgaacctaacaaaacgccgcactttaa |
267 |
Q |
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| T |
33351371 |
tggctgtttctttttgaactatttttccgagagtgaaccgaacaaaacgccgcgctttaa |
33351430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 31565411 - 31565346
Alignment:
| Q |
121 |
tcaaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa |
186 |
Q |
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| T |
31565411 |
tcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa |
31565346 |
T |
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