View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_44 (Length: 284)
Name: NF10994_low_44
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48956358 - 48956223
Alignment:
| Q |
1 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttgattcagtttcagagattgagtgatctggcaacgtgtcatcgccatgttttgca |
100 |
Q |
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| T |
48956358 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttgattctgtttcagagattgagtgatctggca-----tcatcgccatgttttgca |
48956264 |
T |
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| Q |
101 |
tgactgtgatacaaatcgacacagaacacaacaagacaact |
141 |
Q |
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| T |
48956263 |
tgactgtgatacaaatcgacacagaacacaacaagacaact |
48956223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 48956198 - 48956068
Alignment:
| Q |
160 |
agcagtctaatcacggcaccacacttaaatcaatgacatgaaaagagaaaa--------------agagagtaggcttttgttgaatttggacctggact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
48956198 |
agcagtctaatcacggcaccacacttaaatcaatgacatgaaaagagaaaaggagagagagagagagagagtaggcttttgttgaatttggacctgcact |
48956099 |
T |
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| Q |
246 |
tgtgtgannnnnnncttataatatctgtgct |
276 |
Q |
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||||||| ||||||||||||||||| |
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| T |
48956098 |
tgtgtgatttttttcttataatatctgtgct |
48956068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30533834 - 30533788
Alignment:
| Q |
1 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttg |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30533834 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttg |
30533788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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