View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_45 (Length: 275)
Name: NF10994_low_45
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_45 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 8161940 - 8161665
Alignment:
| Q |
2 |
aaaagtgtagccagagagaaaagatagaggagggaaggacctgtagctttcatggctgcagatttttatgttcaaagttgtagtagaagtggtatctatt |
101 |
Q |
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| T |
8161940 |
aaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctgcagatttttatgtccaaagctgtattagaagtggcatctatt |
8161841 |
T |
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| Q |
102 |
taaatgctaggagtg--gaccatgattttttaatcagcttatgggaaacggttagagtnnnnnnngacagtaatttaatttgtaaagtacattgataaaa |
199 |
Q |
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| T |
8161840 |
taaatgctaggagtgtggaccatgattttttaatcagcttatgggaaacggttagagtaaaaaaagacagtaatttaatttgtaaagtacattgataaaa |
8161741 |
T |
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| Q |
200 |
acaacagtcgttaaaactaaagaatgaatttgcgaacaaattcacaacacttgggggatcaaaaagagaaaatctc |
275 |
Q |
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| T |
8161740 |
acaagagttgttaaaactaaagaatgaatttgcgaacaaattcacaacatttgagggatcaaaaagagaaaatctc |
8161665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 8137283 - 8137224
Alignment:
| Q |
2 |
aaaagtgtagccagagagaaaagatagaggagggaaggacctgtagctttcatggctgca |
61 |
Q |
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| T |
8137283 |
aaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgca |
8137224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 2624704 - 2624667
Alignment:
| Q |
212 |
aaaactaaagaatgaatttgcgaacaaattcacaacac |
249 |
Q |
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| T |
2624704 |
aaaaataaagaatgaatttgcgaacaaactcacaacac |
2624667 |
T |
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