View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_5 (Length: 628)
Name: NF10994_low_5
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_5 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 44615691 - 44616281
Alignment:
| Q |
19 |
gatttagaaattctttagtcggt-----caccaatatttctcttattgtctctatgcttatgttacatcatatatataatcatgtcttgtaagattaata |
113 |
Q |
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| T |
44615691 |
gatttagaaattctttagtcggttcggtcaccaatatttctcttattgtctctatgcttatgttacatcatata----atcatgtcttgtaagattaata |
44615786 |
T |
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| Q |
114 |
agatactagatgtaggtaacttggtataaaattgatattttgtgtgttaatgtttggaaaatgaaatagacttaaaatttgtttagnnnnnnngttaaca |
213 |
Q |
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| T |
44615787 |
agatactagatgtaggtaacttggtataaaattgatattttgtgtgttaatgtttggaaaatgaaatagacttgaaatttgtttagtttttt-gttaaca |
44615885 |
T |
|
| Q |
214 |
caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaaatattcaagatgaagaaatttga |
313 |
Q |
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| T |
44615886 |
caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaaatattcaagatgaagaaatttga |
44615985 |
T |
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| Q |
314 |
ttcagttaattggccgagaaggatcaacaagtttctgcactagaaaattttattgtggaaacctgctaataggatttgactaccactgttggattcttag |
413 |
Q |
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| T |
44615986 |
ttcagttaattggccgagaaggatcaacaagtttctgcactagaaaaatttattgtggaaacctgctaataggatttgactaccactgttggattcttag |
44616085 |
T |
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| Q |
414 |
attttcattttcgaggcttagttttgttatgtagaaacattttcatgtgtaatttgtgcactcnnnnnnnnnnnnnnnnngtaacgaaacctttaagttg |
513 |
Q |
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| T |
44616086 |
attttcattttcgaggcttagttttgttatgtagaaacattttcatgtgtaatttgtgcactc-------atatttttttgtaacgaaacctttaagttg |
44616178 |
T |
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| Q |
514 |
aatgtgaaaatggcaatcaattttagtttgaattattttgttgttatccactcttaccatccatctcaaagaaataagagctagtatgagtattgagatt |
613 |
Q |
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| T |
44616179 |
aatgtgaaaatggcaatcaattttagtttgaattattttgttgttatccactcttaccatccatctcaaagaaataagagctaatatgagtattgagatt |
44616278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 44748520 - 44748663
Alignment:
| Q |
214 |
caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttg |
312 |
Q |
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| T |
44748520 |
caagaacttatgtagcctacattctagaagtttttatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg |
44748619 |
T |
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| Q |
313 |
attcagttaattggccgagaaggatcaacaagtttctgcactag |
356 |
Q |
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| T |
44748620 |
attcagttacttgattgggaagaatcaacaagtttttgcactag |
44748663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 44625131 - 44625235
Alignment:
| Q |
249 |
atgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagttt |
347 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||| |||||| || ||||||||| |
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| T |
44625131 |
atgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagttt |
44625230 |
T |
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| Q |
348 |
ctgca |
352 |
Q |
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|||| |
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| T |
44625231 |
ttgca |
44625235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 44749314 - 44749217
Alignment:
| Q |
259 |
tttttcttacaccttgcagattttgttgagaaatat-tcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagtttctgcactag |
356 |
Q |
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| T |
44749314 |
ttttttttacacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactag |
44749217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 44625344 - 44625384
Alignment:
| Q |
436 |
tttgttatgtagaaacattttcatgtgtaatttgtgcactc |
476 |
Q |
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| T |
44625344 |
tttgttatgtagaaacatgttcatgagtaatttttgcactc |
44625384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 3506 - 3434
Alignment:
| Q |
213 |
acaagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgtt |
285 |
Q |
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| T |
3506 |
acaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt |
3434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 44947527 - 44947455
Alignment:
| Q |
213 |
acaagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgtt |
285 |
Q |
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| T |
44947527 |
acaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt |
44947455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 45343538 - 45343583
Alignment:
| Q |
141 |
aaaattgatattttgtgtgttaatgtttggaaaatgaaatagactt |
186 |
Q |
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| T |
45343538 |
aaaattgacatcttgggcgttaatgtttggaaaatgaaatagactt |
45343583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 17061055 - 17061091
Alignment:
| Q |
157 |
gtgttaatgtttggaaaatgaaatagacttaaaattt |
193 |
Q |
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| T |
17061055 |
gtgttaatttttggaaaatgaaatagactcaaaattt |
17061091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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