View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_52 (Length: 244)

Name: NF10994_low_52
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_52
NF10994_low_52
[»] chr7 (3 HSPs)
chr7 (16-78)||(24383786-24383848)
chr7 (33-78)||(24391081-24391126)
chr7 (33-81)||(24384862-24384910)
[»] chr6 (1 HSPs)
chr6 (142-221)||(24950332-24950411)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 24383786 - 24383848
Alignment:
Q  16 gagcagagatgcaaggatttttagtttgggtgataatatatggagaagtgttccaagttttcc 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  24383786 gagcagagatgcaaggatttttagtttgggtgataatatttggaaaagtattccaagttttcc 24383848  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 24391081 - 24391126
Alignment:
Q  33 tttttagtttgggtgataatatatggagaagtgttccaagttttcc 78  Q
    |||||||||||||||||||||| ||||||| | ||| |||||||||    
T  24391081 tttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 24384862 - 24384910
Alignment:
Q  33 tttttagtttgggtgataatatatggagaagtgttccaagttttcctga 81  Q
    ||||||||||||| ||| |||| ||||||||| ||| ||||||||||||    
T  24384862 tttttagtttgggagatgatatttggagaagtattcaaagttttcctga 24384910  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 24950411 - 24950332
Alignment:
Q  142 aactattaactggttggtcattcgaaaggatattacatatgagtgtaataactatacccttgagaattttgcgatcatct 221  Q
    |||| |||| ||||||||||||||||| |||||||||||||| || |||||  ||||  |||||||||||||||||||||    
T  24950411 aactcttaattggttggtcattcgaaatgatattacatatgattggaataatcatactgttgagaattttgcgatcatct 24950332  T

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