View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10994_low_56 (Length: 229)
Name: NF10994_low_56
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 32941359 - 32941561
Alignment:
| Q |
11 |
aagcagagaaagcacgagaaagattcggtgttatgtttctttgattttcttgtcaatttgtttactttcacctgcttttcactgtttatatttgttgtac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32941359 |
aagcagagaaagcacgagaaagattcggtgttatgtttctttgattttcttatcaatttgtttactttcacctgcttttcactgtttatatttgttgtac |
32941458 |
T |
|
| Q |
111 |
ttgtaccacacttcaactcaacttaagcagagtaataaactcttttaaatgttgatcttctctgattaaaaatcattcttgggtaaaccatccacctgtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32941459 |
ttgtaccacacttcaactcaacttaagcagagtaataaactcttttaaatgttgatcttctctgattaaaaatcattcttgggtaaaccatccacctgtt |
32941558 |
T |
|
| Q |
211 |
aag |
213 |
Q |
| |
|
||| |
|
|
| T |
32941559 |
aag |
32941561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University