View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_6 (Length: 620)
Name: NF10994_low_6
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Complemental strand, 34563641 - 34563051
Alignment:
| Q |
17 |
aataccaatatctgataagttaccgctaagggcatctaatcaatctttttataataatctaattataaaatcgattgcatcaaagtgataattcttttgg |
116 |
Q |
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| T |
34563641 |
aataccaatatctgataagttaccgctaagggcatctaatcaatctttttataataatctaattataaaatcgattgcatcaaagtgatatttctttcgg |
34563542 |
T |
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| Q |
117 |
tcaacatgtgcatcatattcatcatatcatattcatatattgtcaaaactacaaacgtaaacgtaagatcatgattaaaaaactgaagtaatcaaaattg |
216 |
Q |
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| T |
34563541 |
tgaacatgtccatcatattcatcatattatattcatatattgtcaaaactacaaac-------taaaatcatgattaaaaaattgaagtgaccaaaattg |
34563449 |
T |
|
| Q |
217 |
caattttttattatnnnnnnnt-ttgggtgaggggtcacttcagtttacattatttaccttcataaatgaatgtgtcaattggtttgcaaagaccatcgt |
315 |
Q |
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| T |
34563448 |
caattttttattataaaaaaaaattgggtgaggggtcacttcagtttacattatttaccttcataaataaatgtgtcaattgatttgcaaagaccatcgt |
34563349 |
T |
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| Q |
316 |
ccgaaactcaaattcatgttaatgcttaatgttgtaagcgttgcttgaccg-gaacttagtttcttt------------gtttttgtttatttttccatt |
402 |
Q |
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| T |
34563348 |
ccgaaactcaatttcatgttaatgcttaatgttataagcgttgctcgtccgcgaacttagtttctttttatgtttctttgtttttgtttatttttccatt |
34563249 |
T |
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| Q |
403 |
gcatnnnnnnnnnnnnnttattaaattgatatagcgcaacaaattaataaatttgaggatttactcatttttgtttataagtgcaatttatagttcaata |
502 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34563248 |
gcataaaagaaaag-----attaaattgatatagcgcaacaaattaataaatttgaggatttactcatttttgtttataagtgcaatttatggttcaata |
34563154 |
T |
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| Q |
503 |
aatggcgtaaacttcattatcaactcaaagtttgtttacctgtcatcaaacttaaacagacaaattcagcgctcttcccgctacgcagttcactctcatt |
602 |
Q |
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| T |
34563153 |
aatgacgtaaacttcactatcaactcaaagtttgtttaactgtcatcaaacttaaacagacaaattcagcgctcttcccgctacgcagttcactctcatt |
34563054 |
T |
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