View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10994_low_61 (Length: 210)
Name: NF10994_low_61
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10994_low_61 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 51941958 - 51942137
Alignment:
| Q |
18 |
aggtcattgtgttttagtcaaagagaagaagaaaaagtnnnnnnnnnt--cgtaagaacaatgtctcttcatgatcaacccaaacacgagtttccctcag |
115 |
Q |
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| T |
51941958 |
aggtcattgtgttttagtcaaagagaagaagaaaaagaaaaaaaaaatatcgtaagaacaatgtctctccatgaccaacc-aaacacgagtttccctcag |
51942056 |
T |
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| Q |
116 |
aatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcat |
196 |
Q |
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| T |
51942057 |
aatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcagcat |
51942137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 4582678 - 4582563
Alignment:
| Q |
95 |
ccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagc |
194 |
Q |
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| T |
4582678 |
ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc |
4582579 |
T |
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| Q |
195 |
atgatcgctgctggct |
210 |
Q |
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| T |
4582578 |
atgatcgctgctggct |
4582563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 4614333 - 4614280
Alignment:
| Q |
104 |
agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat |
157 |
Q |
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| T |
4614333 |
agtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacat |
4614280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 9677807 - 9677701
Alignment:
| Q |
104 |
agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct |
203 |
Q |
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| T |
9677807 |
agtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgct |
9677708 |
T |
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| Q |
204 |
gctggct |
210 |
Q |
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| T |
9677707 |
gctggct |
9677701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 9693546 - 9693442
Alignment:
| Q |
106 |
tttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgc |
205 |
Q |
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| T |
9693546 |
tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt |
9693447 |
T |
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| Q |
206 |
tggct |
210 |
Q |
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||||| |
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| T |
9693446 |
tggct |
9693442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 35160480 - 35160568
Alignment:
| Q |
122 |
caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggct |
210 |
Q |
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| T |
35160480 |
caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggct |
35160568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 35154071 - 35154135
Alignment:
| Q |
104 |
agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgc |
168 |
Q |
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| T |
35154071 |
agtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgc |
35154135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 20154380 - 20154473
Alignment:
| Q |
117 |
atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggct |
210 |
Q |
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| T |
20154380 |
atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggct |
20154473 |
T |
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