View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10994_low_8 (Length: 588)

Name: NF10994_low_8
Description: NF10994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10994_low_8
NF10994_low_8
[»] chr4 (4 HSPs)
chr4 (16-309)||(10659834-10660126)
chr4 (16-309)||(10873979-10874271)
chr4 (521-565)||(10660613-10660657)
chr4 (521-565)||(10874758-10874802)
[»] scaffold0125 (2 HSPs)
scaffold0125 (16-309)||(20186-20470)
scaffold0125 (510-571)||(19971-20033)
[»] chr5 (3 HSPs)
chr5 (33-309)||(21843391-21843666)
chr5 (510-571)||(21843819-21843881)
chr5 (155-226)||(38164018-38164091)
[»] chr2 (2 HSPs)
chr2 (204-304)||(12818574-12818674)
chr2 (33-136)||(12818738-12818843)
[»] chr8 (1 HSPs)
chr8 (15-84)||(8721942-8722010)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 10659834 - 10660126
Alignment:
Q  16 gaattctttcaacacacatcgcaaacccctatctcaaatccctaatatttggctcgtaaatccctctcttagtttacagctcacaaattgaagattttct 115  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||||| |    
T  10659834 gaattctttcaa-acatatcacaaacccctatctcaaatccctaatatttggctcgtaagtcactttcttagtttacagctcacaaattgaggattttgt 10659932  T
Q  116 aatttgaaagttagggttttggctaggcttcttcaaaaattgtcacttggaagtggtaactggggtaaatttcttgtctgaattataacttttgttgtta 215  Q
     | ||| ||||||  |||||| |||||||| || |||| |||||||||||||||| |||||||||||||||||||  ||| ||| ||||||||||||||     
T  10659933 cacttggaagttattgttttgtctaggctttttaaaaacttgtcacttggaagtgataactggggtaaatttcttccctgcattttaacttttgttgttg 10660032  T
Q  216 tttcacctttgaatgaacttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 309  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10660033 tttcacctttgaatgaacttcattagtttcatataattttttttaggaattcccttttgatttttgtttttgggtattctttgaagatatctat 10660126  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 10873979 - 10874271
Alignment:
Q  16 gaattctttcaacacacatcgcaaacccctatctcaaatccctaatatttggctcgtaaatccctctcttagtttacagctcacaaattgaagattttct 115  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||||| |    
T  10873979 gaattctttcaa-acatatcacaaacccctatctcaaatccctaatatttggctcgtaagtcactttcttagtttacagctcacaaattgaggattttgt 10874077  T
Q  116 aatttgaaagttagggttttggctaggcttcttcaaaaattgtcacttggaagtggtaactggggtaaatttcttgtctgaattataacttttgttgtta 215  Q
     | ||| ||||||  |||||| |||||||| || |||| |||||||||||||||| |||||||||||||||||||  ||| ||| ||||||||||||||     
T  10874078 cacttggaagttattgttttgtctaggctttttaaaaacttgtcacttggaagtgataactggggtaaatttcttccctgcattttaacttttgttgttg 10874177  T
Q  216 tttcacctttgaatgaacttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 309  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10874178 tttcacctttgaatgaacttcattagtttcatataattttttttaggaattcccttttgatttttgtttttgggtattctttgaagatatctat 10874271  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 10660613 - 10660657
Alignment:
Q  521 tgttgtgctgttctgctatctgcatttagccggttctgtttgtct 565  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  10660613 tgttgtgctattatgctatctgcatttagccggttctttttgtct 10660657  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 10874758 - 10874802
Alignment:
Q  521 tgttgtgctgttctgctatctgcatttagccggttctgtttgtct 565  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  10874758 tgttgtgctattatgctatctgcatttagccggttctttttgtct 10874802  T

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Target: scaffold0125 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 20470 - 20186
Alignment:
Q  16 gaattctttcaacacacatcgcaaacccctatctcaaatccctaatatttggctcgtaaatccctctcttagtttacagctcacaaattgaagattttct 115  Q
    |||||||||||| ||| ||| ||||||||| ||| |||||||||||||| |||||||||||||||||  ||| || |||||||||||||||||||||| |    
T  20470 gaattctttcaa-acatatcacaaacccctctcttaaatccctaatatt-ggctcgtaaatccctct--tagattgcagctcacaaattgaagattttgt 20375  T
Q  116 aatttgaaagttagggttttggctaggcttcttcaaaaattgtcacttggaagtggtaactggggtaaatttcttgtctgaattataacttttgttgtta 215  Q
     | ||| | |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||| ||    |||||| ||| ||| | ||||     
T  20374 cacttggaggttagggttttgtctaggcttcttccaaaattgtcacttggaagtgataactgggg-aaattcct----tgaattttaattttaggtgttg 20280  T
Q  216 tttcacctttgaatgaacttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 309  Q
    ||||||||||||||| ||||||||||||||||| | |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20279 tttcacctttgaatggacttcattagtttcataaaaaaaaatttagaaattcccttttgattcttgtttttgggtattctttgaagatatctat 20186  T

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Target: scaffold0125; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 571
Target Start/End: Complemental strand, 20033 - 19971
Alignment:
Q  510 gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctct 571  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  20033 gttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctct 19971  T

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Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 21843391 - 21843666
Alignment:
Q  33 atcgcaaacccctatctcaaatccctaatatttggctcgtaaatccctctcttagtttacagctcacaaattgaagattttctaatttgaaagttagggt 132  Q
    ||||||||||||| ||| |||||||||| ||| |||||||||||||||||  ||| || |||||||||||||||||||||| | | ||| | ||||||||    
T  21843391 atcgcaaacccctctcttaaatccctaacatt-ggctcgtaaatccctct--tagattgcagctcacaaattgaagattttgtcacttggaggttagggt 21843487  T
Q  133 tttggctaggcttcttcaaaaattgtcacttggaagtggtaactggggtaaatttcttgtctgaattataacttttgttgttatttcacctttgaatgaa 232  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||   |||||| ||| ||| | |||| ||||||||||||||| |    
T  21843488 tttgtctatgcttcttcaaaaattgtcacttggaagtgataactgaggtaaatctcttccttgaattttaattttaggtgttgtttcacctttgaatgga 21843587  T
Q  233 cttcattagtttcatata--caaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 309  Q
    |||||||| |||||||||      ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21843588 cttcattaatttcatataattttttttttagaaattcccttttgattcttgtttttgggtattctttgaagatatctat 21843666  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 571
Target Start/End: Original strand, 21843819 - 21843881
Alignment:
Q  510 gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtcttgctct 571  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  21843819 gttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctct 21843881  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 38164018 - 38164091
Alignment:
Q  155 ttgtcacttggaagtggtaactggggtaaatttcttgtctgaattataac--ttttgttgttatttcacctttg 226  Q
    ||||| |||||||||| ||||| ||||||||||||| ||| |||| ||||  |||||||||| |||||||||||    
T  38164018 ttgtctcttggaagtgataacttgggtaaatttcttctcttaattttaacatttttgttgttctttcacctttg 38164091  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 12818674 - 12818574
Alignment:
Q  204 cttttgttgttatttcacctttgaatgaacttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagat 303  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12818674 cttttgttgttgtttcacctttgaatgaacttcattagtttcatatacaattttttaggaattcccttttgattcttttttttgggtattctttgaagat 12818575  T
Q  304 a 304  Q
    |    
T  12818574 a 12818574  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 12818843 - 12818738
Alignment:
Q  33 atcgcaaacccctatctcaaatccctaatatttg-gctcgtaaatccctctcttagttta-cagctcacaaattgaagattttctaatttgaaagttagg 130  Q
    ||||||||||||| |||| |||| |||||||||  ||||  |||||||| ||  |||||| ||||||||||||||| |||||||| | ||| ||||||||    
T  12818843 atcgcaaacccctctctcgaatcgctaatattttagctcacaaatccctgtcaaagtttaacagctcacaaattgaggattttctcacttggaagttagg 12818744  T
Q  131 gttttg 136  Q
    ||||||    
T  12818743 gttttg 12818738  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8721942 - 8722010
Alignment:
Q  15 agaattctttcaacacacatcgcaaacccctatctcaaatccctaatatttggctcgtaaatccctctct 84  Q
    |||||||||||| || | |||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  8721942 agaattctttca-cagatatcgcaaatccctctctcaaatccctaatatttggctcctaaatccctctct 8722010  T

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