View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_high_10 (Length: 272)
Name: NF10995_high_10
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_high_10 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 38633357 - 38633508
Alignment:
| Q |
109 |
gatgaaactcgtatatttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaa |
208 |
Q |
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| T |
38633357 |
gatgaaactcatatatttatattgttctggttttcaaattatttttgtgtagtctatgaattctgtgatgctacatagttgcaaaaatttggccgaggaa |
38633456 |
T |
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| Q |
209 |
aaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttca |
260 |
Q |
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| T |
38633457 |
aaaaatattctgagggatataaacattcaacagaaaggtgttgcttcattca |
38633508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 38633235 - 38633335
Alignment:
| Q |
18 |
acaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacaggtattttctatttaatagcatgttataatgatgaaact |
117 |
Q |
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| T |
38633235 |
acaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatatagctattttctatttaatagcatgttataacgatgaaact |
38633334 |
T |
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| Q |
118 |
c |
118 |
Q |
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| T |
38633335 |
c |
38633335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 38690013 - 38690107
Alignment:
| Q |
152 |
tttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaaga |
246 |
Q |
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| T |
38690013 |
tttgtgtagtctttgagttatttgaagctacatggaagcaaaagtttggctgaggagaaacaaattctgagggatataaaaattcaacagaaaga |
38690107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 38637354 - 38637455
Alignment:
| Q |
159 |
agtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgtt |
258 |
Q |
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| T |
38637354 |
agtctttgaattattttaagctacataggagcaaaagtttggccgaagagaaacaaattctgagggatataaagattctgcagaaagatgttgcttcatt |
38637453 |
T |
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| Q |
259 |
ca |
260 |
Q |
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| T |
38637454 |
ca |
38637455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 12384 - 12448
Alignment:
| Q |
196 |
tttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttca |
260 |
Q |
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| T |
12384 |
tttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattca |
12448 |
T |
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