View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_high_4 (Length: 417)
Name: NF10995_high_4
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 5646260 - 5646653
Alignment:
| Q |
8 |
cacgttggataccctatataaacagttctcacgccaattgttttactccttttctcactctcgctattttctaacgttcggaatagaaacaaatcgaggg |
107 |
Q |
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| T |
5646260 |
cacgttggataccctatataaacagttctcacgccaattgttttactccttttctcactctcgctattttctaacgttcggaaaagaaacaaatcgaggt |
5646359 |
T |
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| Q |
108 |
ttagggttttcacttttcaaaatcccagaatcaaaacccaattcattatcaccatggcatcatcgtcaacatcgaccaagaagattactcaaaagcagaa |
207 |
Q |
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| T |
5646360 |
ttagggttttcacttttcaaaatcccagaatcaaaacccaattcattatcaccatggcatcatcgtcaacatcgacaaagaagattactcaaaagcagaa |
5646459 |
T |
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| Q |
208 |
gatgatcaaaatgggtaagcaacaacaatcaaagaagatcaccctggtaagttccgatggcgacaccttcgaaatcgacgaggcggtagcattagaatca |
307 |
Q |
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| T |
5646460 |
gatgatcaaaatgggtaagcaacaacaatcaaagaagatcaccctggtaagttccgatggcgacaccttcgaaatcgacgaggcggtagcattagaatca |
5646559 |
T |
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| Q |
308 |
caaacaatcaagtacttgatcgaggacaattgcgtggacgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattg |
401 |
Q |
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| T |
5646560 |
caaacaatcaagtacatgatcgaggacaattgcgtggacgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattg |
5646653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 401
Target Start/End: Original strand, 11160510 - 11160672
Alignment:
| Q |
239 |
aagaagatcaccctggtaagttccgatggcgacaccttcgaaatcgacgaggcggtagcattagaatcacaaacaatcaagtacttgatcgaggacaatt |
338 |
Q |
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| T |
11160510 |
aagaagatcacactgaagagttccgacaacgagaccttcgaaattgaaaaggcggtggcattagaatctcaaacgatcaagcatttgatcgatgacaatt |
11160609 |
T |
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| Q |
339 |
gcgtggacgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattg |
401 |
Q |
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| T |
11160610 |
gtgccgacgacagtggaatccctcttccaaacgttaccggcaagatcttggctatggttattg |
11160672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 11192627 - 11192571
Alignment:
| Q |
345 |
acgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattg |
401 |
Q |
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| T |
11192627 |
acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattg |
11192571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 36687116 - 36687039
Alignment:
| Q |
241 |
gaagatcaccctggtaagttccgatggcgacaccttcgaaatcgacgaggcggtagcattagaatcacaaacaatcaa |
318 |
Q |
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| T |
36687116 |
gaagatcaccctgaagagttccgacggggagacctttgaaatcgacgaggcagtggcattggaatcacaaacgatcaa |
36687039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 24817071 - 24817162
Alignment:
| Q |
241 |
gaagatcaccctggtaagttccgatggcgacaccttcgaaatcgacgaggcggtagcattagaatcacaaacaatcaagtacttgatcgagg |
332 |
Q |
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| T |
24817071 |
gaagatcaccttgaaaagttccgacggcgagacctttgaaatcgacgaggttgtggcaatggagtcacaaacaatcaagcatgtgatcgagg |
24817162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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