View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_high_5 (Length: 385)
Name: NF10995_high_5
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 46483330 - 46483680
Alignment:
| Q |
19 |
tttatcgcttgttgtcttaagaataatcaaaatgtaagcgaaccacaccaccttaatgtagtagatatgctaaaacaattgtatattttgtatcgtagaa |
118 |
Q |
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| T |
46483330 |
tttatcgcttgttgtcttaataataatcaaaatgcaagcgaaccacaccaccttaatgtagtagatatgctaaaacaattgtatattttgtatcacacag |
46483429 |
T |
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| Q |
119 |
ttgtgaatgtcggacacaataaatgagacactaatcc-ttttttctacaatctcaaacacaacgcaagaaccctgtcctacgcaagttatcttttgttgt |
217 |
Q |
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| T |
46483430 |
ttgtgaatgtcggacacaataaatgagacactaatcctttttttctacaatctcaaacacaacgcaagaaccctgtcctatgcaagttatcttttgtagt |
46483529 |
T |
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| Q |
218 |
tgccctattttgaaatatttttacaccaatattgatatctatgagagaatcannnnnnngaaagctcttgaccaagtcagattggatggatatgttagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
46483530 |
tgccctattttgaaatatttttacaccaatattgatatctatgagagaatcattttattcaaagctcttgaccaagtcagat----tggatatgttactt |
46483625 |
T |
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| Q |
318 |
actccggacattatgaccttgtatacttcttttgttgagtatatacatgttgttc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46483626 |
actccggacattatgaccttgtatacttcttttgttgagtatatacatgttgttc |
46483680 |
T |
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