View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_low_1 (Length: 986)
Name: NF10995_low_1
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 717; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 20 - 970
Target Start/End: Original strand, 35429318 - 35430268
Alignment:
| Q |
20 |
ctaaacactctcttcttgttcagcatccttagtgatgtgcctcaaggcatattagacaaacttctgtctgacattaaagattgtgctagaaatatggctg |
119 |
Q |
| |
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||||||| ||||||| ||||||||||| | ||||| || || | ||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |
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| T |
35429318 |
ctaaacaatctcttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtctggcattaaagaatgtgctagaaatatggttg |
35429417 |
T |
|
| Q |
120 |
cactcaacatcgaagaatctggaacattggagatgaatgtgctactccgtagagttactacactcgttgttgaagaagatggattagatcaatactatca |
219 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
35429418 |
cactcaacatcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatca |
35429517 |
T |
|
| Q |
220 |
aagttctatttatcaacaaaatgtgggtttgtcaatgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttg |
319 |
Q |
| |
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| ||||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
35429518 |
atgttctatttctcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttg |
35429617 |
T |
|
| Q |
320 |
cacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcga |
419 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35429618 |
cacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcga |
35429717 |
T |
|
| Q |
420 |
ctccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggttt |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35429718 |
ctccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgt |
35429817 |
T |
|
| Q |
520 |
attgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtattattgtggtgagag |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35429818 |
attgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtattattgtggtgagag |
35429917 |
T |
|
| Q |
620 |
ccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattnnnnnnnnnnt-tcgcgtattaaaata---a |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |
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| T |
35429918 |
ccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattaaaaaaaaaatatcgcgtattaaaataatta |
35430017 |
T |
|
| Q |
716 |
gttataaagttcttattcttgttannnnnnnaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaatt |
815 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35430018 |
gttataaagttcttattcttgttatttttttaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtatagattatctgaatt |
35430117 |
T |
|
| Q |
816 |
agagagtagcttacatgcttgattactcaatataggttaaacaaacacnnnnnnnntactcttaaattccattacttcgcttttaggagcacttaggaaa |
915 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35430118 |
agagagtatcttacatgcttgattactcaatataggttaaacaaacac----aaaatactcttaaatcccattacttcgcttttaggagcacttaggaaa |
35430213 |
T |
|
| Q |
916 |
aaagaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatg |
970 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35430214 |
aaagaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatg |
35430268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 20 - 686
Target Start/End: Original strand, 35420179 - 35420845
Alignment:
| Q |
20 |
ctaaacactctcttcttgttcagcatccttagtgatgtgcctcaaggcatattagacaaacttctgtctgacattaaagattgtgctagaaatatggctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35420179 |
ctaaacactctcttcttgttcagcatccttagtgatgtgcctcaaggcatattagacaaacttttgtctgacattaaagattgtgctagaaatatggctg |
35420278 |
T |
|
| Q |
120 |
cactcaacatcgaagaatctggaacattggagatgaatgtgctactccgtagagttactacactcgttgttgaagaagatggattagatcaatactatca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420279 |
cactcaacatcgaagaatctggaacattggagatgaatgtgctgctccttagagttactacactcgttgttgaagaagatggattagatcaatactatca |
35420378 |
T |
|
| Q |
220 |
aagttctatttatcaacaaaatgtgggtttgtcaatgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35420379 |
aagttctatttatcaacaaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttg |
35420478 |
T |
|
| Q |
320 |
cacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
35420479 |
cacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcaa |
35420578 |
T |
|
| Q |
420 |
ctccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggttt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35420579 |
ctccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgt |
35420678 |
T |
|
| Q |
520 |
attgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtattattgtggtgagag |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35420679 |
attgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtattattgtggtgagag |
35420778 |
T |
|
| Q |
620 |
ccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttga |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35420779 |
ccactgattctagttattctttggctcttttttgtttgtatgtttctgcaatcgcacttcttgttga |
35420845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 35423499 - 35423543
Alignment:
| Q |
341 |
ctctttcatacaaaatgctctcatatttttcataaagagtgtatt |
385 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 262 - 479
Target Start/End: Original strand, 25079673 - 25079888
Alignment:
| Q |
262 |
ggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctct |
361 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| | || | ||| | | ||||||| || ||||| |||||| |
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| T |
25079673 |
ggatgttgaaactacttcaaattctaccgatcaatgttcaatttgtttgatggagtttcttaatggatcatatttagaactcctt-ttacaagatgctc- |
25079770 |
T |
|
| Q |
362 |
catatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgag |
461 |
Q |
| |
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|||||||| ||||||||||| ||||| | | ||| ||| ||||||||||| |||| || | | |||||| ||| ||| |||||| ||||||| |||| |
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| T |
25079771 |
catattttccataaagagtgcattgccaaatggatatattgatgcatcaattgttcatcttcttgttcttgaccattgtatcgacatgagataaagtgaa |
25079870 |
T |
|
| Q |
462 |
tagagaagggacaatatg |
479 |
Q |
| |
|
|||||| |||| ||||| |
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|
| T |
25079871 |
aagagaaaggactatatg |
25079888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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