View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_low_2 (Length: 854)
Name: NF10995_low_2
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 525 - 834
Target Start/End: Complemental strand, 39299171 - 39298862
Alignment:
| Q |
525 |
tggagaaagcagcacaagccaaagatgcaactcttgagaaaacacaacaaggttatgaagcaacaaaagacactgtttcaagcgctgcaaaaactgcaac |
624 |
Q |
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| T |
39299171 |
tggagaaagcagcacaagccaaagatgcaactgttgagaaaacacaacaaggttatgaagcaacaaaagacactgtttcaagcgctgcaaaaactgcaac |
39299072 |
T |
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| Q |
625 |
agaatatgctacccctgtggcggagaaagccaagtctgcagttgttcaggcaaaggatgttactgtagagacagggaagactgctgcggaagttgcaagc |
724 |
Q |
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| T |
39299071 |
agaatatgttacccctgtggcggagaaagccaagtctgcagttgttcaggcaaaggatgttactgtagagacagggaagactgctgcggaagttgcaagc |
39298972 |
T |
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| Q |
725 |
aaagtggcggttgatttgaaggataaggccaccgtggcagggtggactgcggcacattattcgacgaagttgaccgtggatggaactaaggctgcagcgc |
824 |
Q |
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| T |
39298971 |
aaagtggcggttgatttgaaggataaggccaccgtggcagggtggactgcggcacattattcgacgaagttgaccgtggatggaactaaggctgcagcgc |
39298872 |
T |
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| Q |
825 |
atgctgttga |
834 |
Q |
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| T |
39298871 |
atgctgttga |
39298862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 39299679 - 39299562
Alignment:
| Q |
17 |
atgaacagaggaatgggaacaggacaagttgtggccgagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
116 |
Q |
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| T |
39299679 |
atgaacagaggaatgggaacaggacaagttgtggcagagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
39299580 |
T |
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| Q |
117 |
atgtaggttcaatgtggg |
134 |
Q |
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| T |
39299579 |
atgtaggttcgatgtggg |
39299562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 39299471 - 39299363
Alignment:
| Q |
225 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgtagctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgg |
324 |
Q |
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| T |
39299471 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgttgctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgc |
39299372 |
T |
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| Q |
325 |
tgctgaaca |
333 |
Q |
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| T |
39299371 |
tgctgaaca |
39299363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 39299332 - 39299247
Alignment:
| Q |
364 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatg |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299332 |
aatgtctttggaagagatagggaagtatagaaaccaagcacaacaaaatgaaatggacgcaatctcagcagcacaagagaggtatg |
39299247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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