View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10995_low_3 (Length: 709)
Name: NF10995_low_3
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 36723311 - 36723895
Alignment:
| Q |
1 |
atgtttctcaaaaggaatagtttcccacgtacaagcacaacatgactttcgacaaataaggtgatagtagagagcaaccaaagaaggaacaaaagatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723311 |
atgtttctcaaaaggaatagtttcccacgtacaagcacaacatgactttcgacaaataaggtgatagtagagagcaaccaaagaaggaacaaaagatagt |
36723410 |
T |
|
| Q |
101 |
aatatatgcaaccaattgaggttgccattatattttgtgctgaaggcatacagatctatgagtattaggaagtgtttcttttatagtggcttgtcaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723411 |
aatatatgcaaccaattgaggttgccattatattttgtgctgaaggcatacagatctatgagtattaggaagtgtttcttttatagtggcttgtcaacca |
36723510 |
T |
|
| Q |
201 |
tggaaaatgcaaacatgtgctaatatgtcttactattttttattacatgcgtggaacgcgaggctcttgatgtgaaattatttctatatcggcccacgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723511 |
tggaaaatgcaaacatgtgctaatatgtcttactattttttattacatgcgtggaacgcgaggctcttgatgtgaaattatttctatatcggcccacgca |
36723610 |
T |
|
| Q |
301 |
aggcctactactaccattatactcaacttgcctactattggagtgggcacgtgttcattttggaggattactagtaaccaactaacaatgtcnnnnnnna |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36723611 |
aggcctactactaccattatactcaacttgcctactattggagtgggcacgtgttcattttggaggattactagtaaccaactaacaatgtc-tttttta |
36723709 |
T |
|
| Q |
401 |
agaagcaattcaatccatttcattag-aaaaatacgtcaaatacacgaaggtacatcatcataggtgtgggagttagtattatgtgggactatctgagct |
499 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
36723710 |
agaatcaattcaaggcatttcattagcaaaaatatgccaaatacacgaaggtatatcatcataggtgtgagagctagtattatgtgggactatctgagct |
36723809 |
T |
|
| Q |
500 |
aactcatgagcaacctcattagcctgactttattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagca |
585 |
Q |
| |
|
||||| ||||||| | |||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36723810 |
aactcgtgagcaatcccattagtctgactctattaaactcaacttaagagttttgaaatctactatgaaataactgtctacaagca |
36723895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 572 - 698
Target Start/End: Original strand, 36724252 - 36724378
Alignment:
| Q |
572 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
|
| Q |
672 |
attatcaaattgaaggtctgatgtcca |
698 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36724352 |
attatcaaattgaaggtctgatgtcca |
36724378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 408 - 698
Target Start/End: Complemental strand, 717648 - 717356
Alignment:
| Q |
408 |
attcaatccatttcattaga-aaaatacgtcaaatacacgaaggtacatcatcataggtgtgggagttagtattatgtgggactatctgagctaactcat |
506 |
Q |
| |
|
||||||| ||||| ||||| |||||| |||||||| | || |||||||||||||| ||| | || ||| |||||||||| |||| ||||||||||| | |
|
|
| T |
717648 |
attcaatgcattttattagttaaaatatgtcaaataaatgacggtacatcatcataagtgagagatctagcattatgtggggctatatgagctaactcgt |
717549 |
T |
|
| Q |
507 |
gagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattc |
605 |
Q |
| |
|
|| | | ||||||| || || |||||||||||| |||||||||||||||||||| || ||||| |||||||| || ||||||| |||| |||||| |
|
|
| T |
717548 |
aagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgtctacattcaactataatacatccaaattc |
717449 |
T |
|
| Q |
606 |
accattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
698 |
Q |
| |
|
|| | ||||| || | | |||||| |||||| ||| | ||| | ||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
717448 |
actactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattatcaaattgaaggtgtgatgtcca |
717356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 530 - 699
Target Start/End: Complemental strand, 712314 - 712145
Alignment:
| Q |
530 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
629 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||| |||| |||||||| | |||||| || | |||||| |
|
|
| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
|
| Q |
630 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccat |
699 |
Q |
| |
|
|| |||||||||| | ||| | ||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccat |
712145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 530 - 698
Target Start/End: Complemental strand, 14541248 - 14541080
Alignment:
| Q |
530 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
629 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
|
|
| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
630 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
698 |
Q |
| |
|
|| |||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtcca |
14541080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 699
Target Start/End: Original strand, 2087537 - 2087573
Alignment:
| Q |
663 |
aaaatctgtattatcaaattgaaggtctgatgtccat |
699 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccat |
2087573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University