View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10995_low_4 (Length: 557)
Name: NF10995_low_4
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 15 - 548
Target Start/End: Original strand, 26570576 - 26571109
Alignment:
| Q |
15 |
agtttgtttctacttataagagcagccttgtccattactttcatagcaaaatgagcatcagttcctttaagttcaacaagataaacacttccaatgtctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570576 |
agtttgtttctacttataagagcagccttgtccattactttcatagcaaaatgagcatcagttcctttaagttcaacaagataaacacttccaatgtctc |
26570675 |
T |
|
| Q |
115 |
cataaccgatacgcttcagaagcctaaaatgggtaagatttagaggactatttttggaagccatgttaattgcatcccaccttatatcaccaccagtatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570676 |
cataaccgatacgcttcagaagcctaaaatgggtaagatttagaggactatttttggaagccatgttaattgcatcccaccttatatcaccaccagtatg |
26570775 |
T |
|
| Q |
215 |
tggcctaatgttcgatgaacaacttgtgctctctaaactgtcgcttcgagagctagctccacttcctggcgcaccttgattgttcgtctttgtagtagta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26570776 |
tggcctaatgttcgatgaacaacttgtgctctctaaactgtcgcttcgagagctagctccacttcctggcgcaccttgattgttcgtctttgtattagta |
26570875 |
T |
|
| Q |
315 |
gacataccctttgaaactcctgatggtaatggagttgcagcatcagaatttgaaggcatcctgctgttccttggactttgtcttaagaaagcatcaggaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570876 |
gacataccctttgaaactcctgatggtaatggagttgcagcatcagaatttgaaggcatcctgctgttccttggactttgtcttaagaaagcatcaggaa |
26570975 |
T |
|
| Q |
415 |
tgtttttgtttggtggacttagtttctgtggtctagttttatttgcagaatttgaatctgtttttgaaacttggtccatatgtttagtagattcacttgc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570976 |
tgtttttgtttggtggacttagtttctgtggtctagttttatttgcagaatttgaatctgtttttgaaacttggtccatatgtttagtagattcacttgc |
26571075 |
T |
|
| Q |
515 |
tgaatattcatttttgtatgcttctttttcttct |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26571076 |
tgaatattcatttttgtatgcttctttttcttct |
26571109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 18408094 - 18408161
Alignment:
| Q |
78 |
cctttaagttcaacaagataaacacttccaatgtctccataaccgatacgcttcagaagcctaaaatg |
145 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||| |
|
|
| T |
18408094 |
cctttaagttcaacaagatacacacttccaatgtcaccgtaaccaacacgcttcacaagccgaaaatg |
18408161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University