View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10995_low_8 (Length: 362)
Name: NF10995_low_8
Description: NF10995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10995_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 41 - 347
Target Start/End: Complemental strand, 14832436 - 14832111
Alignment:
| Q |
41 |
ggaatattcaatgtatatgcggaaattgaatccggctttgctaacaagagttatcgatactcagaattcattttaatttctcaattcatattactgctaa |
140 |
Q |
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| T |
14832436 |
ggaatattcaatgtatatgcggaaattgaatccggctttgctaacaagagttatcgatactccgaattcattttaatttctcaattcatattactgctaa |
14832337 |
T |
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| Q |
141 |
tgaatgtatgtaattagtaattaggtaaagcacaatgaaatagattataggaaatatccttgaatgagggttgttgaaaagaaacttggtaaaatatcct |
240 |
Q |
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| T |
14832336 |
tgaatgcatgtaattagttattaggtaaagcacaatgaaaaagattataggaaatatccttgaatgagggttgttgaaaagaaacttggtaaaatatcct |
14832237 |
T |
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| Q |
241 |
tttatgtaaacccttttcttagtgacaaatactta-------------------aggaaataaatcacacagacaggaaaacagttttgtatattccatt |
321 |
Q |
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| T |
14832236 |
tttatgtaaactcttttcttagtgacaaatacttacatttaaacacataactttggcaaataaatcacacggacaggaaaacagttttgtatattccatt |
14832137 |
T |
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| Q |
322 |
gttgttttcaaatacttacacttcat |
347 |
Q |
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| T |
14832136 |
gttgttttcaaatacttacacttcat |
14832111 |
T |
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