View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_high_7 (Length: 397)
Name: NF10996_high_7
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 1348146 - 1348507
Alignment:
| Q |
16 |
caactcctaacaacattcacatcatcactatatatagctggccttttagcatctttctttgcttcatcaatcacaagagtctttggtcgcaaaccatcaa |
115 |
Q |
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| T |
1348146 |
caacttctaacaacattcacatcatcactatatatagctggccttttagcatctttctttgcatcatcaatcacaagagcctttggtcgcaaaccatcaa |
1348245 |
T |
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| Q |
116 |
ttcttgtaggtggtgctgcattccttattggagcagctcttggtggtgctgcacttaatatatacatgctaatacttggtcgtgttcttcttggagttgg |
215 |
Q |
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| T |
1348246 |
ttcttgtaggtggtgctgcattccttattggagcagctcttggtggtgctgcacttaatatatacatgctaatacttggtcgtgttcttcttggagttgg |
1348345 |
T |
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| Q |
216 |
aattggctttgctaatcaggta---------tttctccaattacaatgtttttctaacttatttgatttacaagtcaatgataaaaaagagagataatgg |
306 |
Q |
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| T |
1348346 |
aattggctttgctaatcaggtataatcaatctttctccaattacaatgtttttcaaatttatttgatttacatgtcaatgatgaaaaagagagataatgg |
1348445 |
T |
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| Q |
307 |
cactctttaggccacagatttagaaattttagtgatagtgacataaatatgtaagttaatatatggctgcctt |
379 |
Q |
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|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
1348446 |
cactttttaggccacatatttagaa-----------agtgacataaatatgtaagttaatatatggttgcctt |
1348507 |
T |
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