View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10996_low_1 (Length: 611)

Name: NF10996_low_1
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10996_low_1
NF10996_low_1
[»] chr4 (1 HSPs)
chr4 (17-588)||(25793139-25793710)
[»] chr3 (14 HSPs)
chr3 (315-514)||(10212816-10213001)
chr3 (19-129)||(10377945-10378055)
chr3 (315-532)||(10133715-10133918)
chr3 (315-532)||(10101874-10102078)
chr3 (20-128)||(10075174-10075282)
chr3 (314-436)||(10365757-10365879)
chr3 (20-128)||(10136729-10136837)
chr3 (315-404)||(10136450-10136539)
chr3 (318-427)||(10378208-10378317)
chr3 (20-128)||(10134094-10134202)
chr3 (48-105)||(10365502-10365559)
chr3 (471-532)||(10074981-10075042)
chr3 (458-507)||(10136332-10136381)
chr3 (337-373)||(10075062-10075098)
[»] scaffold0045 (3 HSPs)
scaffold0045 (41-128)||(85807-85894)
scaffold0045 (315-371)||(84896-84952)
scaffold0045 (476-533)||(84690-84747)
[»] chr7 (1 HSPs)
chr7 (560-589)||(32210262-32210291)
[»] chr2 (1 HSPs)
chr2 (560-589)||(7751487-7751516)


Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 25793710 - 25793139
Alignment:
Q  17 acatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793710 acatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca 25793611  T
Q  117 tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccgtatcatgatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  25793610 tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccatctcatgatt 25793511  T
Q  217 ttgaaggactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatgaaaaatgataaattt 316  Q
    | |||||||||||||||||||||||||||||| |||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||    
T  25793510 tggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatgaaaaatgataaattt 25793411  T
Q  317 accaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25793410 accaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacag 25793311  T
Q  417 ccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcacta 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25793310 ccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgacaatagctatattgtttcacta 25793211  T
Q  517 ctacttaccagaaaaccccctaaagaaaaagtataatcgtcactaagttataagttgtttttataagctatc 588  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25793210 ctacttaccagaaaaccccctaaagaaaaagtataatcgtcattaagttataagttgtttttataagctatc 25793139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 315 - 514
Target Start/End: Complemental strand, 10213001 - 10212816
Alignment:
Q  315 ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacac 414  Q
    |||||||||||||| || ||| |||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||         |||||||    
T  10213001 ttaccaattgcttcgaccagaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgct---------taaacac 10212911  T
Q  415 aaccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcac 514  Q
    | ||||||||||||     ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  10212910 agccctaaaatgat-----atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcac 10212816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 10377945 - 10378055
Alignment:
Q  19 atcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcata 118  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  | |||||||     
T  10377945 atcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatt 10378044  T
Q  119 cattttattga 129  Q
     ||||||||||    
T  10378045 tattttattga 10378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 315 - 532
Target Start/End: Complemental strand, 10133918 - 10133715
Alignment:
Q  315 ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacac 414  Q
    |||||||||||||| || ||| ||| |||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||          ||||||    
T  10133918 ttaccaattgcttcgaccagacgcaaaaccatatttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgcta---------aaacac 10133828  T
Q  415 aaccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcac 514  Q
    | ||||||||| ||     ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  10133827 agccctaaaattat-----atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcac 10133733  T
Q  515 tactacttaccagaaaac 532  Q
     | |||||| ||||||||    
T  10133732 caatacttatcagaaaac 10133715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 315 - 532
Target Start/End: Complemental strand, 10102078 - 10101874
Alignment:
Q  315 ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacac 414  Q
    ||||||||||| || ||  || |||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||  |        ||||    
T  10102078 ttaccaattgcgtcgacctgaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgcttaga--------acac 10101987  T
Q  415 aaccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcac 514  Q
    | ||||||||||||     ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  10101986 agccctaaaatgat-----atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcac 10101892  T
Q  515 tactacttaccagaaaac 532  Q
     | |||||| ||||||||    
T  10101891 caatacttatcagaaaac 10101874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10075282 - 10075174
Alignment:
Q  20 tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 119  Q
    ||||||||| |||||||||| |||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  10075282 tcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaacatctgcagcagcaagattcattt 10075183  T
Q  120 attttattg 128  Q
    |||||||||    
T  10075182 attttattg 10075174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 314 - 436
Target Start/End: Original strand, 10365757 - 10365879
Alignment:
Q  314 tttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaaca 413  Q
    |||||||| ||||||||| ||  | |||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||     
T  10365757 tttaccaactgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacaacttgaccaataaactttgtatgcatcgacaatataaacg 10365856  T
Q  414 caaccctaaaatgatcaagaata 436  Q
    |||||||||||||| || |||||    
T  10365857 caaccctaaaatgagcatgaata 10365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10136837 - 10136729
Alignment:
Q  20 tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 119  Q
    |||||||| | |||| |||| |||||||||||||  | ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||      
T  10136837 tcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatctgcagcagcaagattcattt 10136738  T
Q  120 attttattg 128  Q
    |||||||||    
T  10136737 attttattg 10136729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 10136539 - 10136450
Alignment:
Q  315 ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaaca 404  Q
    ||||||||||||||||| ||  | |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  10136539 ttaccaattgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgcttaaaca 10136450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 427
Target Start/End: Original strand, 10378208 - 10378317
Alignment:
Q  318 ccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacaac 417  Q
    |||||||||||||| |   | |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||  || ||||||||||| ||||    
T  10378208 ccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatgtatcgacaatataaacgcaac 10378307  T
Q  418 cctaaaatga 427  Q
    ||||||||||    
T  10378308 cctaaaatga 10378317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10134202 - 10134094
Alignment:
Q  20 tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac 119  Q
    |||||||||||||||||||| ||||||||||| |||  ||| || |||||||||||||  |||||||||||||||||||||||||||  |||| ||||      
T  10134202 tcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagactcattt 10134103  T
Q  120 attttattg 128  Q
    |||||||||    
T  10134102 attttattg 10134094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 10365502 - 10365559
Alignment:
Q  48 catataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagc 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10365502 catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagc 10365559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 10075042 - 10074981
Alignment:
Q  471 acatgaataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaac 532  Q
    |||||||||||||||||||||||| | ||||| |||| |||||| | |||||| ||||||||    
T  10075042 acatgaataagtttattaatatgacactagctctattatttcaccaatacttatcagaaaac 10074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 10136381 - 10136332
Alignment:
Q  458 aggcttgttcatgacatgaataagtttattaatatgaaaatagctatatt 507  Q
    |||||| |||||||||||||||||||||||||||||| | ||||| ||||    
T  10136381 aggcttattcatgacatgaataagtttattaatatgacactagctgtatt 10136332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 10075098 - 10075062
Alignment:
Q  337 gcagaaccatctttccagtgtgaactcctttgacaca 373  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10075098 gcagaaccatatttccagtgtgaactcctttgacaca 10075062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 85894 - 85807
Alignment:
Q  41 aacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattttattg 128  Q
    |||| ||||||||  | ||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||  |||||||||    
T  85894 aacattccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattg 85807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 84952 - 84896
Alignment:
Q  315 ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgaca 371  Q
    ||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||    
T  84952 ttaccaattgcttcaaccagcctcagaaccatctttccagtgtgaactcctttgaca 84896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 84747 - 84690
Alignment:
Q  476 aataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaacc 533  Q
    ||||||||||||||||||| | ||||| |||| |||||||| ||||||| ||||||||    
T  84747 aataagtttattaatatgacactagctctattatttcactaatacttacgagaaaacc 84690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 589
Target Start/End: Original strand, 32210262 - 32210291
Alignment:
Q  560 taagttataagttgtttttataagctatct 589  Q
    ||||||||||||||||||||||||||||||    
T  32210262 taagttataagttgtttttataagctatct 32210291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 589
Target Start/End: Complemental strand, 7751516 - 7751487
Alignment:
Q  560 taagttataagttgtttttataagctatct 589  Q
    ||||||||||||||||||||||||||||||    
T  7751516 taagttataagttgtttttataagctatct 7751487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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