View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_low_10 (Length: 368)
Name: NF10996_low_10
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_10 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 21893 - 21546
Alignment:
| Q |
21 |
ttggcaacaactcgtattgcttgtttgttgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatctcaa |
120 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21893 |
ttggcaaccactcgtattgcttgtttgtcgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatctcaa |
21794 |
T |
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| Q |
121 |
aggaaaaacagtttccttttctccaactgattgttccaagacctaagtttccaattactattttctcaaataaagctattaaatgtggtttatcgatggt |
220 |
Q |
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| T |
21793 |
aggaaaaacagtttccttttctccaactgattgttccaagacctaagtttccaattactattttttgaaataaagctattaaatgtggtttatcgatggt |
21694 |
T |
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| Q |
221 |
gattgtaatgagcatgagtccaaaaaatagagaccatcacaaccgtcttctatgtacttttttctttggcatcgttattgtaagttgtagcagtattgaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21693 |
gattgtaatgagcatgagtccaaaaaatagagaccatcacaaccgtcttctatgtacttttttctttggcatcgttattgtaagttgtaacagtattgaa |
21594 |
T |
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| Q |
321 |
taattgaaccaaaaggtttttgaagataacttgatatagcacgtggac |
368 |
Q |
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| T |
21593 |
taattgaaccaaaaggtttttgaagataacttgatatagcacgtggac |
21546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 13855 - 13715
Alignment:
| Q |
21 |
ttggcaacaactcgtattgcttgtttgttgtaccaaataaaggtatttccatctttggaaatagagcacaatttaattttttagttgggtacgatctcaa |
120 |
Q |
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||||||||||||||||||||||||| | ||||| || | | |||||||||||||||||| |||||| || ||||| |||| | || |||||| | |
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| T |
13855 |
ttggcaacaactcgtattgcttgttggccataccatccaatgatctttccatctttggaaatatagcacacgttgattttctagtagaatatgatctcga |
13756 |
T |
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| Q |
121 |
aggaaaaacagtttccttttctccaactgattgttccaaga |
161 |
Q |
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||| |||| |||||||||| |||||| |||||||||||||| |
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| T |
13755 |
agggaaaaaagtttcctttgctccaagtgattgttccaaga |
13715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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