View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_low_11 (Length: 352)
Name: NF10996_low_11
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_11 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 240950 - 240615
Alignment:
| Q |
1 |
gtgaaagatcacgtgagggtcattttgttgtatttttgggtacatagatcatgtgggatcatgctgtaacttgtgtataagagaagtactgtccagaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
240950 |
gtgaaagatcacgtgagggtcattttgttgtttttttgggtacatagatcatgtgggatcatgctgtaacttgtgtataagagaagtactgtccagcaaa |
240851 |
T |
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| Q |
101 |
gtggatggtggcttattatctaaggggttgcgtttgaattttgggtttaaacactcgaaaaatatggggtgttggatgatttatttcacatgggatagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240850 |
gtggatggtggcttattatctaaggggttgcgtttgaattttgggtttaaacactcgaaaaatatggggtgttggatgatttatttcacatgggatagct |
240751 |
T |
|
| Q |
201 |
gacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctcagttttggtaaaattttagcaccttagtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240750 |
gacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctcagttttggtaaaattttagcaccttagtta |
240651 |
T |
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| Q |
301 |
aatagagacataaaatagaacaatacagcaaattcc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
240650 |
aatagagacataaaatagaacaatacagcaaattcc |
240615 |
T |
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