View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_low_12 (Length: 351)
Name: NF10996_low_12
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 29908012 - 29908340
Alignment:
| Q |
1 |
acagcaatacaaaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaa |
100 |
Q |
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| T |
29908012 |
acagcaatacaaaccttctcatcaacaaacaccatctcaattgaattgatctgttatgattgaagaaaatcacgcacctcccacaaacgaacaacacgaa |
29908111 |
T |
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| Q |
101 |
gcttgaatccccaagactcctttccaggaacaacatcagacaccaaatcaaagctgcgatacctctgtgaccagacctaagacccttgttatcaaaccta |
200 |
Q |
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| T |
29908112 |
gcttgaatctccaagactctcttccaggaagaacatcagacagcaaatcaaagctgcgatacctctgtgaccagacctaagacccttgttatcaaaccta |
29908211 |
T |
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| Q |
201 |
acacctttcaacattgcagaagacattnnnnnnnntgatttaaaccatagcagatcggaaatcggaaaaagaaaagaatgagatgagttgtcagaaacag |
300 |
Q |
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| T |
29908212 |
acacctttcaacattgcagaagacattaaaaaaaaagatttaaaccagagcagattggaaatcggaaaaagaaaagaatgagatgagttgtgagaaacag |
29908311 |
T |
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| Q |
301 |
aaagaaatccaggactatttatagaggat |
329 |
Q |
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| T |
29908312 |
aaagaaatccaggactatttatagaggat |
29908340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 29908839 - 29908984
Alignment:
| Q |
12 |
aaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaagcttgaatccc |
111 |
Q |
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||||||||||||||| ||||||||||||| |||||| | ||||| | |||||||| ||| | ||||||||| ||| || ||| ||| |||||| | |
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| T |
29908839 |
aaccttctcatcaaccaacaccatctcaaccgaattcacctgttcaggatgaagaaacgcaggagcctcccacagacgcaccacacgaacaatgaatctc |
29908938 |
T |
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| Q |
112 |
caagactcctttccaggaacaacatcagacaccaaatcaaagctgc |
157 |
Q |
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| T |
29908939 |
caagactcctttccaggagcagcatcagataacagatcaaaactgc |
29908984 |
T |
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