View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10996_low_3 (Length: 546)
Name: NF10996_low_3
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Original strand, 24238656 - 24239168
Alignment:
| Q |
20 |
gtgtccaacattaacacagacactgaattatgtgtgtccgggcgtgtctgtatccgtacttcatagttttgcccaatataaataaaaactggagaacaag |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238656 |
gtgtccaacattaacaaagacactgaattatgtgt--ccgagcgtgtctgtatccgtacttcatagttttgcccaatataaataaaaactggagaacaag |
24238753 |
T |
|
| Q |
120 |
agnnnnnnn--gaaactcacctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattg |
217 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24238754 |
aagaaaaaaaagaaactcacctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaacataacaactcccatcagaacaagattg |
24238853 |
T |
|
| Q |
218 |
aacaccaaaaccatgactttgtccattaaaccattccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgttta |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238854 |
aacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgttta |
24238953 |
T |
|
| Q |
318 |
taacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238954 |
taacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataat |
24239053 |
T |
|
| Q |
418 |
aatgataaactccacttccattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaaattcaacttcaacgccttcttttaataa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
24239054 |
aatgataaactccacttccattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaaattcaacttcaacaccttcttt---taa |
24239150 |
T |
|
| Q |
518 |
caaccctttcccgttctt |
535 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
24239151 |
caaccctttcacgttctt |
24239168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 136 - 490
Target Start/End: Original strand, 32693506 - 32693860
Alignment:
| Q |
136 |
acctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgact |
235 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||| ||||| ||| | ||||||||| |
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| T |
32693506 |
acctaaaatggtaacaaccaagaccatgtttaacaccatgtttaaacatcccaacataagtactagcatcagaacaagtttgaagacccataccatgact |
32693605 |
T |
|
| Q |
236 |
ttgtccattaaaccattccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatcta |
335 |
Q |
| |
|
||| |||||| ||||||| |||||| || |||||| |||||| || ||||||||||||||||||||||||| |||| | |||| ||||||||||||| |
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|
| T |
32693606 |
ttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattccttttctatactgacccttatatcta |
32693705 |
T |
|
| Q |
336 |
cttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccacttc |
435 |
Q |
| |
|
|| || |||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| ||| || ||||||| |
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|
| T |
32693706 |
ctccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatcttccattcacaaagtaattatacacaccacttc |
32693805 |
T |
|
| Q |
436 |
cattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaaa |
490 |
Q |
| |
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| |||| |||| ||||| || |||||||| |||||||| ||||||||||| |
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|
| T |
32693806 |
cgttacttcttcctttatgaaactccccttcgtaaaaatcaccgttgctgtaaaa |
32693860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 433
Target Start/End: Original strand, 1586805 - 1587085
Alignment:
| Q |
153 |
ccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccatt |
252 |
Q |
| |
|
||||||||||||||| ||| ||||||| || |||||| | | ||| |||||| ||||| ||||||||| ||||||||| |||||||| ||||||| |
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|
| T |
1586805 |
ccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccattcaaccatt |
1586904 |
T |
|
| Q |
253 |
ccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagct |
352 |
Q |
| |
|
| |||| |||| ||| | |||||||||||||||||||||| | |||| |||||| || | | |||| ||||||||| ||||||||| || ||| || |
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|
| T |
1586905 |
caccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaact |
1587004 |
T |
|
| Q |
353 |
ttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccact |
433 |
Q |
| |
|
|||| ||| |||| |||||||| || |||||||||| ||||||||||||||||||| || ||| | |||||| ||||| |
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|
| T |
1587005 |
ctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccact |
1587085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 41090290 - 41090390
Alignment:
| Q |
333 |
ctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccac |
432 |
Q |
| |
|
|||||||| |||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||| |||||||||||| || | |||||||||| |||| |
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|
| T |
41090290 |
ctacttcctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccac |
41090389 |
T |
|
| Q |
433 |
t |
433 |
Q |
| |
|
| |
|
|
| T |
41090390 |
t |
41090390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 314
Target Start/End: Original strand, 17303535 - 17303697
Alignment:
| Q |
152 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccat |
251 |
Q |
| |
|
|||||| ||||||||| ||| | |||||||| |||||||| | ||| ||||| ||||| |||||||| | |||||||| ||||||||| ||||| |
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|
| T |
17303535 |
accaaggccatgtttaacaccccatttaaattctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
17303634 |
T |
|
| Q |
252 |
tccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgt |
314 |
Q |
| |
|
|| |||| |||| ||| | ||||||||| |||||||||||| | ||||||||||| |||||| |
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|
| T |
17303635 |
tctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgt |
17303697 |
T |
|
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