View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_low_4 (Length: 537)
Name: NF10996_low_4
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 20336566 - 20336929
Alignment:
| Q |
1 |
atgcctataagcacttaacaacaactgccttcacgaaatatgtggacaattgcttttgagaccaacgatgaattttataaagattatcatcaaagaggta |
100 |
Q |
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| T |
20336566 |
atgcctataggcacttaacaacaactgccttcacgaaatttgtggacaattacttttgagatcaacgatgaattttataaagattatcatcaaagaggta |
20336665 |
T |
|
| Q |
101 |
acctagaaggttacttcaatgagataatttaaggtaatgtttttcataactagcactataatgtgcattagttgaaaaagtaaaggaaaattgaaaaatt |
200 |
Q |
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| T |
20336666 |
acctagaaggttacttcaatgagataatttaaggtactgtttttcataa--agcactataacgtgcattagttaaaaaagtaaaaaaaaattgaaaaatt |
20336763 |
T |
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| Q |
201 |
tgcatcaaaattgacaacttttatcatgataaagaaattaaaaaatgaatagttattttctcaagtgtcttacaaacactctttaacattttatatttgt |
300 |
Q |
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| T |
20336764 |
tgcatcaaaattgacaacttttatcatgataaagaaattaaaaaatgaatacttattttctcaagtgtcttacaaacactctttaacattttatatttgt |
20336863 |
T |
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| Q |
301 |
tttgttgaacaaagaaagtatatgaaagaaggaaaatacttgtctggtttcggtcatttggacatt |
366 |
Q |
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| T |
20336864 |
tttgttgaacaaagaaagtatatgaaagaaggaaaatacttgtctggtttcggtcatttggacatt |
20336929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 20337016 - 20337085
Alignment:
| Q |
453 |
gagatcctaattcatcaatccttaacaacggttgcagaccctcaggaggggaggaatgaatagacaaaac |
522 |
Q |
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| T |
20337016 |
gagatcctaattcatcaatccttaacaacggttgcagaccctcaggaggggaggaatgaatagacaaaac |
20337085 |
T |
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