View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10996_low_7 (Length: 462)
Name: NF10996_low_7
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 36892942 - 36893400
Alignment:
| Q |
1 |
ttaggtggtgataaaccttggcagattgctggttctgccttgcacatgatgtgggatataaagtggtttcaggtacataaaat-gtataatctttatctc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
36892942 |
ttaggtggtgataaaccttggcagattgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaattgtataatctttatctc |
36893041 |
T |
|
| Q |
100 |
ttccaagtgaaaatgtttgtacaagttgatccatgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcat |
199 |
Q |
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| T |
36893042 |
ttccaagtgaaaatgtttgtacaagttgatccatgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcat |
36893141 |
T |
|
| Q |
200 |
tttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893142 |
tttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcg |
36893241 |
T |
|
| Q |
300 |
gaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893242 |
gaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattag |
36893341 |
T |
|
| Q |
400 |
aaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgctcctcc |
458 |
Q |
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| T |
36893342 |
aaggcaagcctgcattcgatgtctttgccatttcttcacttatcggtctctgcttctcc |
36893400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 159 - 453
Target Start/End: Original strand, 36883098 - 36883392
Alignment:
| Q |
159 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
258 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || |
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| T |
36883098 |
ttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaa |
36883197 |
T |
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| Q |
259 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgc |
358 |
Q |
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| T |
36883198 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagcca |
36883297 |
T |
|
| Q |
359 |
tgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
453 |
Q |
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||||||||||||||||| ||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| |
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| T |
36883298 |
agtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 424
Target Start/End: Original strand, 36902908 - 36903168
Alignment:
| Q |
161 |
ggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggt |
260 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||| | || ||||| || ||||||||| | | | || |||||| || |||| ||||| |
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| T |
36902908 |
ggagcagtatatcaaaagccttgtgccagaacacttacatttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggt |
36903007 |
T |
|
| Q |
261 |
cttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctg |
360 |
Q |
| |
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|||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| || | |
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| T |
36903008 |
cttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcag |
36903107 |
T |
|
| Q |
361 |
tacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
424 |
Q |
| |
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|||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
36903108 |
tacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 36881859 - 36881936
Alignment:
| Q |
2 |
taggtggtgataaaccttggcagattgctggttctgccttgcacatgatgtgggatataaagtggtttcaggtacata |
79 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
36881859 |
taggtgatggtaaaccttggcagattgctggttctgccttacaaatgatgtgggatataaaatggtttcaggtacata |
36881936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
29 |
ctggttctgccttgcacatgatgtgggatataaagtggtttcaggta |
75 |
Q |
| |
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||||| |||||||||| ||||||||| ||||||| |||||||||||| |
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| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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