View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10996_low_8 (Length: 412)
Name: NF10996_low_8
Description: NF10996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10996_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 69 - 394
Target Start/End: Original strand, 14552802 - 14553127
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552802 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgctccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
14552901 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552902 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
14553001 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14553002 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
14553101 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14553102 |
gaggaaatgtccccaggcattgtgga |
14553127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14552663 - 14552732
Alignment:
| Q |
1 |
tagtaattatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552663 |
tagtaattatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
14552732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 69 - 394
Target Start/End: Original strand, 37702113 - 37702438
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
37702113 |
tcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaactctggtaaagtttctag |
37702212 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |||||||| ||||||| |
|
|
| T |
37702213 |
ccaattgggaaatgtatcctctatgttgttgtcaccaaggtccaatacttcaagatttgaacattgagccaaagactgcggtaatggtccttccaattgg |
37702312 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37702313 |
ttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgcatatccaaaatagagagat |
37702412 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
37702413 |
gaggaaatgttcccagacattgtgga |
37702438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 69 - 394
Target Start/End: Complemental strand, 37393607 - 37393282
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37393607 |
tcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacctgtaactcttgtagagtttctag |
37393508 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||| | ||||||| |||||||| ||||||| |
|
|
| T |
37393507 |
ccaattgggaaaagtatcctctatgttgttgtcaccaaggtccaatacttcaagatatgaacagtaagccaaacattgtggtaatggtccttccaattgg |
37393408 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37393407 |
tttccattcaattttatagtctcaaatatatttcctttggaaaaggttccaggaatgcttccacagaggttgttcatttgcatatccaaaatagagagat |
37393308 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
|| |||||| || || ||||||||| |
|
|
| T |
37393307 |
aagaaaatgttcctagacattgtgga |
37393282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 37593634 - 37593922
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
37593634 |
tcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgtagagtttctag |
37593733 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||| || ||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
37593734 |
ccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaatgaacagtgagacaaagactgtggtaatggtccttccaattgg |
37593833 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37593834 |
tttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37593922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 37696025 - 37696313
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
37696025 |
tcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgtagagtttctag |
37696124 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||| || ||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
37696125 |
ccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaatgaacagtgagacaaagactgtggtaatggtccttccaattgg |
37696224 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37696225 |
tttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37696313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 37532530 - 37532818
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
37532530 |
tcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgtagagtttctag |
37532629 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||| || ||||||||| ||||||||||| ||| ||||| |||| |||||||| ||||||| |
|
|
| T |
37532630 |
ccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaatgaacagtgagacaaagactggggtaatggtccttccaattgg |
37532729 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37532730 |
tttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37532818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 69 - 394
Target Start/End: Original strand, 37710934 - 37711259
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37710934 |
tcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctag |
37711033 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||||||| || |||||||||| |||||||| |||||| || ||||||| || ||||| ||||||| |
|
|
| T |
37711034 |
ccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaatgatccttccaattgg |
37711133 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
37711134 |
ttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaaaacatagagat |
37711233 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
37711234 |
taggaaatgttcctaggcattgtgga |
37711259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 69 - 394
Target Start/End: Original strand, 37639176 - 37639501
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37639176 |
tcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctag |
37639275 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||||||| || |||||||||| |||||||| |||||| || ||||||| |||||||| ||||||| |
|
|
| T |
37639276 |
ccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaatggtccttccaattgg |
37639375 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| | || ||| |
|
|
| T |
37639376 |
ttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgcatatccaatacagtaagag |
37639475 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
37639476 |
aagttaatgttcccaggcattgtgga |
37639501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 357
Target Start/End: Complemental strand, 37401728 - 37401440
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37401728 |
tcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctag |
37401629 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||||||| || |||||||||| |||||||| |||||| || ||||||| |||||||| ||||||| |
|
|
| T |
37401628 |
ccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaatggtccttccaattgg |
37401529 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37401528 |
ttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37401440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 37823334 - 37823622
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37823334 |
tcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctag |
37823433 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||||||| || |||||||||| |||||||| |||||| || ||||||| |||||||| ||||||| |
|
|
| T |
37823434 |
ccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaatggtccttccaattgg |
37823533 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37823534 |
ttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37823622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 69 - 394
Target Start/End: Complemental strand, 37413895 - 37413570
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37413895 |
tcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaactcttgtagagtttctag |
37413796 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| | |||||||||||| || | |||||| |||||||||| |||||||| |||||| |
|
|
| T |
37413795 |
ccaattgggaaatgtatcctctatattgttgtcaccaaggtccagaacttcaagatttatgcactaagccaaagactgtggtaatggtccttccaattga |
37413696 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||| | ||||||| | ||||||||||||||||||||| ||||| ||| |
|
|
| T |
37413695 |
tttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatacaagttgttcatttgcatatccaatatagaaagag |
37413596 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
37413595 |
aaggaaatgttcctaggcattgtgga |
37413570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 69 - 394
Target Start/End: Complemental strand, 37383056 - 37382731
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||| || |||||||| || ||||| | |||||||| |||||| ||||| ||||| |||||||||||||| || |
|
|
| T |
37383056 |
tcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttatttgatcttaaactgagcacctgtaattcttgtagagtttcaag |
37382957 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||| |||||||| || ||||| || |||| |||||||||||| |||||||||| |||||||| |||| || |
|
|
| T |
37382956 |
ccaattgggaaaagtatcctctacgttgttgtctccaaggtccaaaacttcgagttttgtacagtgagccaaagactgtggtaatggtccttccaatcgg |
37382857 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaa |
368 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| | || ||| |
|
|
| T |
37382856 |
tttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatgtgtccatagaggttgttcatttgcatatccaataccgaaagag |
37382757 |
T |
|
| Q |
369 |
gaggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
||||||||| |||| |||||||||| |
|
|
| T |
37382756 |
aaggaaatgttcccaagcattgtgga |
37382731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 71 - 394
Target Start/End: Original strand, 37435142 - 37435465
Alignment:
| Q |
71 |
aacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctagcc |
170 |
Q |
| |
|
||||||| ||| | ||| ||| || ||||||||||||||| ||| | ||| | |||||||| |||||| || || ||||||||||||||||||||||||| |
|
|
| T |
37435142 |
aacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagtttatttgatcttaaactgagtacctgtaactcttgtagagtttctagcc |
37435241 |
T |
|
| Q |
171 |
aattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattggtt |
270 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| || | || || | || |||||||||||| || || |||| |||||||| |||||||| |
|
|
| T |
37435242 |
aattgggaaatgtatcctctatgttgttgtatccaaggtccaaaattttgagttctgtacagtgagccaaagattgaggtaatggtccttctaattggtt |
37435341 |
T |
|
| Q |
271 |
tccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaaga |
370 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| | ||||| ||| |||| ||| |||||| ||||||||||||||||||||||||| || |||| | |
|
|
| T |
37435342 |
gccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatgcttccattaaggttgttcatttgcatatccaaaacggaaagaaaa |
37435441 |
T |
|
| Q |
371 |
ggaaatgtccccaggcattgtgga |
394 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
37435442 |
ggaaatgttcccaggcattttgga |
37435465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37393746 - 37393677
Alignment:
| Q |
1 |
tagtaattatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
37393746 |
tagtaattaaagtatctggctttacccatgtattgcaaaccaatttggctgttattcacatccatcattc |
37393677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 37428348 - 37428412
Alignment:
| Q |
6 |
attatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
37428348 |
attatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattc |
37428412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 37532414 - 37532460
Alignment:
| Q |
24 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37532414 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattc |
37532460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 37593518 - 37593564
Alignment:
| Q |
24 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37593518 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattc |
37593564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 37695909 - 37695955
Alignment:
| Q |
24 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37695909 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattc |
37695955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 37435022 - 37435070
Alignment:
| Q |
22 |
ttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
37435022 |
ttacccatgtattgcaaaccaatctggctatcattcacattcatcattc |
37435070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 37823218 - 37823264
Alignment:
| Q |
24 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
37823218 |
acccatgtattgcaaaccaatttggtcgtcactcacattcatcattc |
37823264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 69 - 357
Target Start/End: Complemental strand, 16843726 - 16843438
Alignment:
| Q |
69 |
tcaacttaggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctag |
168 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||||| | || ||||||| ||| ||||||||| || || |||||||||||||||||||| || |
|
|
| T |
16843726 |
tcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattattagatcgtaaaacgagtacctgtaactcttgtagagtttcaag |
16843627 |
T |
|
| Q |
169 |
ccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattgg |
268 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
16843626 |
ccaactgggaaatgtatcctctatgttgttgtcaccaaggtccaaaacttcaagatatgaacagtgagacaaagactgtggtaatggtccttccaattgg |
16843527 |
T |
|
| Q |
269 |
tttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16843526 |
tttccattcaactttatagtctgaaatgcatttcctttggaaaaggttttaggaatgcttccatagaggttgttcatttgcatatccaa |
16843438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 77 - 394
Target Start/End: Complemental strand, 24218453 - 24218136
Alignment:
| Q |
77 |
ggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctagccaattgg |
176 |
Q |
| |
|
|||||||| || ||| |||||||||| |||||| |||| ||||||||||||||||||||||| || || ||||||||||| ||| ||||| |||||||| |
|
|
| T |
24218453 |
ggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgatttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgg |
24218354 |
T |
|
| Q |
177 |
gaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattggtttccatt |
276 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||| || |||||||| | || ||||||||||| |||||||||| |||||| | ||||||||| ||||| |
|
|
| T |
24218353 |
gaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccatt |
24218254 |
T |
|
| Q |
277 |
caactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaatagagagaagaggaaat |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||||||||||| | ||| ||| ||||||| |
|
|
| T |
24218253 |
caactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcatatccaatacagaaagataaggaaat |
24218154 |
T |
|
| Q |
377 |
gtccccaggcattgtgga |
394 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
24218153 |
gttcccaggcattgtgga |
24218136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 77 - 357
Target Start/End: Complemental strand, 16846386 - 16846106
Alignment:
| Q |
77 |
ggaaatgaatgcttgatgctagaacaggtgattgcaccgtgaagatgatttgatcgtaaacttagcacttgtaactcttgtagagtttctagccaattgg |
176 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||| ||| | ||| | |||||| | |||||| || || |||||||||||||||||||| |||||| ||| |
|
|
| T |
16846386 |
ggaaatggatgcttggtgctagaacatgtgattgaaccataaagtttatttgaccttaaactgagtacatgtaactcttgtagagtttcaagccaactgg |
16846287 |
T |
|
| Q |
177 |
gaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgactgtggtagtggtcctttcaattggtttccatt |
276 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||||||| |||||||| ||| || ||| |||||| |||||||| ||||||||| ||||| |
|
|
| T |
16846286 |
gaaatgtatcctctatgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagctaaagaccgtggtaatggtccttccaattggttgccatt |
16846187 |
T |
|
| Q |
277 |
caactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaa |
357 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
16846186 |
caactttatagtgacaaacacatttcctttggaaaaggttctaggaatgcttccaaagaggttgttcatttgcatatccaa |
16846106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 16843841 - 16843796
Alignment:
| Q |
25 |
cccatgtattgcaaaccaatttggctgtcattcacgttcatcattc |
70 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
16843841 |
cccatgtattgcaaaccaatctggctatcatccacattcatcattc |
16843796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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