View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10997_low_2 (Length: 305)

Name: NF10997_low_2
Description: NF10997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10997_low_2
NF10997_low_2
[»] chr5 (11 HSPs)
chr5 (14-299)||(43311270-43311555)
chr5 (71-216)||(39463354-39463499)
chr5 (53-205)||(39476754-39476906)
chr5 (57-216)||(39473261-39473420)
chr5 (53-284)||(39484428-39484659)
chr5 (53-298)||(39455777-39456022)
chr5 (53-216)||(39487696-39487859)
chr5 (72-234)||(39457093-39457255)
chr5 (65-298)||(39461402-39461635)
chr5 (53-219)||(39452228-39452394)
chr5 (142-232)||(39452846-39452936)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 43311270 - 43311555
Alignment:
Q  14 actaataccctccaaccattttgtatgtggtcagtaacataatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43311270 actaataccctccaaccattttgtatgtggtcagtaacataatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatc 43311369  T
Q  114 caccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43311370 caccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgat 43311469  T
Q  214 cttgtctgaagctaaaagataatcacgcccaacatcgtactccatcctataatccactgcaatctccacacccatcttcatctcag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43311470 cttgtctgaagctaaaagataatcacgcccaacatcgtactccatcctataatccactgcaatctccacacccatcttcagctcag 43311555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 39463354 - 39463499
Alignment:
Q  71 ataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttcctta 170  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| ||||||||||| |||||| |||  | |||||||||||||||||||||||||||||    
T  39463354 ataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttcctta 39463453  T
Q  171 cctctccatctgtttccaacacactccttattcctttctcgatctt 216  Q
    | ||||||||  | || |||||||||||||||||| |||| |||||    
T  39463454 cttctccatccttatctaacacactccttattcctctctcaatctt 39463499  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 39476906 - 39476754
Alignment:
Q  53 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 152  Q
    ||||||||||| | || |||||||||||||||||||| ||||||  || |||| ||||||||||| |||||||| |||||| |||  | |||||||||||    
T  39476906 taatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatct 39476807  T
Q  153 ctttcactttcttccttacctctccatctgtttccaacacactccttattcct 205  Q
    ||||||||||||||||||| ||| ||||  | |||||||||||||||||||||    
T  39476806 ctttcactttcttccttacatctgcatccttatccaacacactccttattcct 39476754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 39473420 - 39473261
Alignment:
Q  57 ttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctcttt 156  Q
    ||||||| ||||||||||||||||||| ||| | ||||||  | | ||| ||||||||||| |||||||| |||||| |||  | |||||||||||||||    
T  39473420 ttcatacctgattcataatataatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctcttt 39473321  T
Q  157 cactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatctt 216  Q
    ||||||||||||||| ||||||||  | ||||||||||||||||||||| |||| |||||    
T  39473320 cactttcttccttacatctccatccttatccaacacactccttattcctctctcaatctt 39473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 39484659 - 39484428
Alignment:
Q  53 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 152  Q
    |||||| |||| |||||||||||||||||||||| |  ||||||  |||||||||||||||||||||||||||| ||||||||||  |  |||||||| |    
T  39484659 taatttgatacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcattt 39484560  T
Q  153 ctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagataatcacgcccaacatcgta 252  Q
     ||||||||||||| | |||||||||||  | | |||||||||||||||| || |||| |||||||| | |  || |||||| | |  | || ||    |    
T  39484559 ttttcactttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttagactcaccactaaa 39484460  T
Q  253 ctccatcctataatccactgcaatctccacac 284  Q
    ||||||||||||||||| ||||||||||||||    
T  39484459 ctccatcctataatccaatgcaatctccacac 39484428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 39456022 - 39455777
Alignment:
Q  53 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 152  Q
    |||||| |||| || ||||||||||||||||| |||| ||||||  ||||| | |||||||| ||||||||||| |||||| | |  | |||||||||||    
T  39456022 taatttgatacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatct 39455923  T
Q  153 ctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagataatcacgcccaacatcgta 252  Q
    |||||||| | ||||| | |||||||||  | ||||| ||||||||||||||| |||| |||||||| |||| ||||||||| | | |||||  |   ||    
T  39455922 ctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactactata 39455823  T
Q  253 ctccatcctataatccactgcaatctccacacccatcttcatctca 298  Q
    ||||| ||||||||| |  |||||||||||| | ||||||| ||||    
T  39455822 ctccaccctataatctagcgcaatctccacagcaatcttcagctca 39455777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 39487859 - 39487696
Alignment:
Q  53 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 152  Q
    |||||| |||| ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||| |||||| |||  | |||||||||||    
T  39487859 taatttgatacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactcatct 39487760  T
Q  153 ctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatctt 216  Q
    || ||||||| ||||| |  ||||||||  | ||||||| | ||||||||||| |||| |||||    
T  39487759 ctatcacttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatctt 39487696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 39457093 - 39457255
Alignment:
Q  72 taatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttccttac 171  Q
    |||||||||| ||||||| ||||||  |||||||||||||||| || |||||||  |||||| |||    | ||||||||||||||||||||||||||||    
T  39457093 taatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactcatctctttcactttcttccttac 39457192  T
Q  172 ctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagata 234  Q
    |||||||||  | |||||||||||| |||||||| |||| |||||||| | || |||||||||    
T  39457193 ctctccatccttatccaacacactctttattcctctctcaatcttgtcggcagttaaaagata 39457255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 298
Target Start/End: Complemental strand, 39461635 - 39461402
Alignment:
Q  65 tgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcactttct 164  Q
    ||||||| |||| |||| || |||| ||||||   | |||| |||||||||||||||||||| || |||||||  | |||||||||||||||||||||||    
T  39461635 tgattcacaataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttct 39461536  T
Q  165 tccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagataatcacgcccaacatcgtactccatcctata 264  Q
    | || |||||||||||  ||||||||||| ||||||||||| |||| |||||||| | || || |||||| | | || || ||| | ||||||  |||||    
T  39461535 ttctgacctctccatccttttccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttaggctcaccattgaactccactctata 39461436  T
Q  265 atccactgcaatctccacacccatcttcatctca 298  Q
    ||| |   ||||||||||| ||||||||| ||||    
T  39461435 atctaacacaatctccacagccatcttcagctca 39461402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 39452394 - 39452228
Alignment:
Q  53 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 152  Q
    ||||||||||| || ||||||||||||||||| |||| || |||  || || |||||||||| || |||||||  |||||| |||  | |||||||||||    
T  39452394 taatttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactcttttcactcatct 39452295  T
Q  153 ctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtc 219  Q
    |||||| ||| ||||| | |||||||||  | |||||||||||||||||||||||||| ||||||||    
T  39452294 ctttcatttttttcctgaactctccatccttatccaacacactccttattcctttctcaatcttgtc 39452228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 39452846 - 39452936
Alignment:
Q  142 ttcactcatctctttcactttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaaga 232  Q
    |||||| ||||||| ||||||||| ||||||||||||||  | | |||||||||| |||||||| |||| || ||||| | || |||||||    
T  39452846 ttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagttaaaaga 39452936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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