View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10998_high_3 (Length: 271)
Name: NF10998_high_3
Description: NF10998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10998_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11550940 - 11551203
Alignment:
| Q |
1 |
tagttttaccgatggttgttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatttggtattgctatgatattg |
100 |
Q |
| |
|
|||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11550940 |
tagttttatcaatggtggttcgacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatttggcattgctatgatattg |
11551039 |
T |
|
| Q |
101 |
tctcatactgagttataa--------ctcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaaatgactaatgactattgatcacc |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11551040 |
tctcatactgagttataagtatttaactcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaaatgactaatgactattgatcacc |
11551139 |
T |
|
| Q |
193 |
agtggatcttcatttcgctgcaagtacttcggtgccttatttgtttgattatttgagtgattat |
256 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11551140 |
agtggatcttcatttcgctgcaattacttcggtgccttatttgtttgattatttgagtgattat |
11551203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11562298 - 11562218
Alignment:
| Q |
1 |
tagttttaccgatggttgttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttcatatttttatt |
81 |
Q |
| |
|
|||||||| | ||||| ||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11562298 |
tagttttatcaatggtggttagacaaaatgattgagtttgctttttattttatgaatctatatgtagttcatatttttatt |
11562218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 11546264 - 11546413
Alignment:
| Q |
118 |
actcaaaatgatttggggcacatgcttttcattttacatatttggtatcaaa----atgac-------taatgactattgatcaccagtggatcttcatt |
206 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||| | |||||||||||| |
|
|
| T |
11546264 |
actcgaaatgatttggggaacatgcttttcattttacatatttcgtatcaaaagatatgtctgtcctataatggctattgatcactattggatcttcatt |
11546363 |
T |
|
| Q |
207 |
tcgctgcaagtacttcggtgccttatttgtttgattatttgagtgattat |
256 |
Q |
| |
|
|| |||||| ||||| |||||||||||||||| ||| |||||| |||| |
|
|
| T |
11546364 |
tcactgcaataacttcagtgccttatttgtttgcttagctgagtggttat |
11546413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 11546195 - 11546264
Alignment:
| Q |
2 |
agttttaccgatggttgttcaacaaaatgattgagttggcttttaattttatgaatatatatgtagttca |
71 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
11546195 |
agttttattgatggtggttagacaaaatgattgagttggcttttaattttatgaatctatatgtatttca |
11546264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University