View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10998_low_2 (Length: 296)
Name: NF10998_low_2
Description: NF10998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10998_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 11550680 - 11550960
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
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| T |
11550680 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
11550779 |
T |
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| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgacaacaagactatatgaaacatgaacttttaggatatgaa |
212 |
Q |
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| T |
11550780 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgacaacaagactatatgaaacatgaacttttaggatatgaa |
11550879 |
T |
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| Q |
213 |
tattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaagtagttttaccgatggtggttc |
293 |
Q |
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| T |
11550880 |
tattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaaatagttttatcaatggtggttc |
11550960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 11562559 - 11562279
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11562559 |
cagacgcaggttgttaccgtgaagccacttgacagaaatggatttcaacagaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
11562460 |
T |
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| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgac-aacaagactatatgaaacatgaacttttaggatatga |
211 |
Q |
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| T |
11562459 |
ctaatcttttcaacttagtagaactaattaaagatggcaaggtttgtctggtcacagttgacaaacaagaccatatgaaacatgaacttttaggatatgg |
11562360 |
T |
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| Q |
212 |
atattggtactttgttctgcttttactctatttattttgttggtctggaagagtatgcaagtagttttaccgatggtggtt |
292 |
Q |
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| T |
11562359 |
atgttggtactttgttctgcttttactctatttattatggtgttctggaagaatatgcaagtagttttatcaatggtggtt |
11562279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 11545990 - 11546180
Alignment:
| Q |
13 |
cagatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccacc |
112 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11545990 |
cagacgcaggttgttacggtgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgcaccacc |
11546089 |
T |
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| Q |
113 |
ctaatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagttgacaacaagactatatgaaacatgaactttta |
203 |
Q |
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| T |
11546090 |
ttaatcttttcaacttagtagaattaattaaagatggcaaggtttgtccggtcacagttgacaacaagaccatatgaattatgaactttta |
11546180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 1188264 - 1188202
Alignment:
| Q |
191 |
acatgaacttttaggatatgaatattggtactttgttctgcttttactctatttattttgttg |
253 |
Q |
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| T |
1188264 |
acatgaacttttaggatatcaaatttggtactttgttctccttttacttgatttattgtgttg |
1188202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 27472137 - 27472189
Alignment:
| Q |
186 |
atgaaacatgaacttttaggatatgaatattggtactttgttctgcttttact |
238 |
Q |
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| T |
27472137 |
atgaaacatgatttgttaggatattgatgttggtactttgttctgcttttact |
27472189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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