View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_high_11 (Length: 221)
Name: NF10999_high_11
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 12290635 - 12290830
Alignment:
| Q |
10 |
gcagcagagaccagacccttcacacatgtacacacaaacacaaattnnnnnnnnnnnnnntagtacttcctaatggaaaaatcacaccaccactcacttc |
109 |
Q |
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| T |
12290635 |
gcagcagagaccagacccttcatacatgtacacacaaacacaaatcaaaaaagaaaaaaatggtacttcctaatggaaaaatcacaccaccactcacttc |
12290734 |
T |
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| Q |
110 |
atgaacactatatgtcgctgctctagaaaaccacaaagttaagccaataaaaaatccaatgataaacactatggcgaaaacgatgatgactttgat |
205 |
Q |
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| T |
12290735 |
atgaacactatatgttgctgctctagaaaaccacgaagttaagccaataaaaaatccaatgataaacactatggcgaaaacgatgatgactttgat |
12290830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 12292496 - 12292356
Alignment:
| Q |
70 |
tagtacttcctaatggaaaaatcacaccaccactcacttcatgaacactatatgtcgctgctctagaaaaccacaaagttaagccaataaaaaatccaat |
169 |
Q |
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||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12292496 |
tagtacttcctaatggaaaaacaacaccactactcactccatgaacaccatatgtcgctgctctagaaaaccacgaagttaagccaataaaaaatccaat |
12292397 |
T |
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| Q |
170 |
gataaacactatggcgaaaacgatgatgactttgatgtcca |
210 |
Q |
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| T |
12292396 |
tataaacactaatttgaaaacgatgatgactttgatatcca |
12292356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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