View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10999_high_5 (Length: 336)

Name: NF10999_high_5
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10999_high_5
NF10999_high_5
[»] chr4 (14 HSPs)
chr4 (19-336)||(36630498-36630818)
chr4 (23-269)||(36642258-36642494)
chr4 (19-264)||(36910737-36910978)
chr4 (53-268)||(36635595-36635804)
chr4 (85-327)||(18365469-18365703)
chr4 (85-327)||(36597222-36597455)
chr4 (19-127)||(35969502-35969610)
chr4 (86-268)||(18361271-18361441)
chr4 (218-269)||(18084429-18084480)
chr4 (218-269)||(36664529-36664580)
chr4 (153-268)||(36601486-36601589)
chr4 (86-135)||(36601608-36601657)
chr4 (89-141)||(18084309-18084361)
chr4 (89-141)||(36664648-36664700)
[»] chr8 (1 HSPs)
chr8 (19-122)||(35336944-35337047)
[»] chr1 (2 HSPs)
chr1 (154-217)||(42601610-42601673)
chr1 (19-122)||(42601686-42601789)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 36630498 - 36630818
Alignment:
Q  19 agttgacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttatttaaaaatca 118  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  36630498 agttgacttcttgcgacaaaacccgtcgtcggctgaagttaacatcacaacagattacccaggttgttttaatcttaagcaggtagttatttaaaagtca 36630597  T
Q  119 taagggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaat 218  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36630598 taagggagccaagtgtggtaattatttttttgacaatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaat 36630697  T
Q  219 tactaaacaggttgaagaatctataaagggtgagaagattatcaactatcgctcacaagttaccacgcctgcctctttctttgttgcacctgcttgtgc- 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||     
T  36630698 tactaaacaggttgaagaatctataaagggtgagaagattatcaactatcgctcacaaattgccacgcctgcctctttctctgttgcacctgcttgtgct 36630797  T
Q  318 --tgagtctgcttttgctcct 336  Q
      |||||||||||||||||||    
T  36630798 gatgagtctgcttttgctcct 36630818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 36642494 - 36642258
Alignment:
Q  23 gacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttatttaaaaatcataag 122  Q
    ||||||||| |||||||| || |||| || |||||||||||| | ||| ||||| | | ||||||||||||||||||||| |||||||||||  ||||||    
T  36642494 gacttcttgcgacaaaactcaccgtctgcggaagttaacatctttacagattactcggattgttttaatcttaagcaggttgttatttaaaatccataag 36642395  T
Q  123 ggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaattact 222  Q
    |||||  ||||||||||||        || ||||| |||||||||| ||| |||||||||| |||||||||||||||||||||| |||       |||||    
T  36642394 ggagctgagtgtggtaatt---cttttgagaatctcagcttagatagtttcaaatgaaacaaccataagaagagtttgtgattgtttg-------ttact 36642305  T
Q  223 aaacaggttgaagaatctataaagggtgagaagattatcaactatcg 269  Q
    || ||||||| ||||||||||||||| |  ||||| |||| ||||||    
T  36642304 aagcaggttgtagaatctataaagggcgctaagatcatcagctatcg 36642258  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 36910737 - 36910978
Alignment:
Q  19 agttgacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtag----ttatttaaaa 114  Q
    ||||||||||||| |||||||| |  | || || ||||||||||||| |||| |||||     || ||||||||||||||||||||    ||||||||||    
T  36910737 agttgacttcttgcgacaaaactcgccctcagcggaagttaacatcacaacagattactttatttattttaatcttaagcaggtagctagttatttaaaa 36910836  T
Q  115 atcataagggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatac 214  Q
    | |||| ||||||  |||||| |||||        || ||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||        
T  36910837 accatatgggagctgagtgtgttaatt-ttttgttgagaatctgagcttagataattttaaatgacacaaccataagaagagtttgtaattggttg---- 36910931  T
Q  215 taattactaaacaggttgaagaatctataaagggtgagaagattatcaac 264  Q
       ||||||||||||||| ||||||||||||||| | |||||||||||||    
T  36910932 ---ttactaaacaggttgtagaatctataaagggcgcgaagattatcaac 36910978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 36635804 - 36635595
Alignment:
Q  53 gaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttattta-----aaaatcataagggagccaagtgtggtaattannnnn 147  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||      ||||||||||| | |  | |||| | |||          
T  36635804 gaagttaacatcacaacaaattacccggcttgttttaatcttaagcaggtagttatttataaatcaaatcataaggaaactgaatgtgat-atttttttt 36635706  T
Q  148 nngacaatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaattactaaacaggttgaagaatctataaagg 247  Q
      || ||||||||||||||||||||||||||||||| | ||   |||||||||||||||||||        | |||||||||||||||||||||||||||    
T  36635705 ttgagaatctaagcttagataattttaaatgaaacaacgat---aagagtttgtgattggttg-------ctgctaaacaggttgaagaatctataaagg 36635616  T
Q  248 gtgagaagattatcaactatc 268  Q
    ||| |||| ||||||||||||    
T  36635615 gtgcgaaggttatcaactatc 36635595  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 327
Target Start/End: Original strand, 18365469 - 18365703
Alignment:
Q  85 ttttaatcttaagcaggtagttatttaaaaatcataagggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacag 184  Q
    ||||||| | ||||||||||||||||||||| ||||||| | || ||||||||||||        || ||||| ||||| ||||| || ||||  ||||     
T  18365469 ttttaatatcaagcaggtagttatttaaaaaccataaggtaaccgagtgtggtaatt-tttttttgagaatctgagctttgataaattcaaatttaacaa 18365567  T
Q  185 ccataagaagagtttgtgattggttgatactaattactaaacaggttgaagaatctataaagggtgagaagattatcaactatcgctcacaagttaccac 284  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||| | |||||| | || ||| |  |||||| || |  |    
T  18365568 ccataagaagagtttgtgattggttg-------ttactaaacaggttgaagaatccataaagggagcgaagatgaccagctaccattcacaattttctgc 18365660  T
Q  285 gcctgcctctttctttgttgcacctgcttgtgctgagtctgct 327  Q
    | ||||| ||| || ||| |||||||||| |||||||||||||    
T  18365661 gtctgccccttcctctgtcgcacctgcttctgctgagtctgct 18365703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 327
Target Start/End: Complemental strand, 36597455 - 36597222
Alignment:
Q  85 ttttaatcttaagcaggtagttatttaaaaatcataagggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacag 184  Q
    ||||||| | ||||||||||||||||||||| ||||||| | || ||||||||||||        || ||||| ||||| ||||| || ||||  ||||     
T  36597455 ttttaatatcaagcaggtagttatttaaaaaccataaggtaaccgagtgtggtaatt--ttttttgagaatctgagctttgataaattcaaatttaacaa 36597358  T
Q  185 ccataagaagagtttgtgattggttgatactaattactaaacaggttgaagaatctataaagggtgagaagattatcaactatcgctcacaagttaccac 284  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||| | |||||| | || ||| |  |||||| || |  |    
T  36597357 ccataagaagagtttgtgattggttg-------ttactaaacaggttgaagaatccataaagggagcgaagatgaccagctaccattcacaattttctgc 36597265  T
Q  285 gcctgcctctttctttgttgcacctgcttgtgctgagtctgct 327  Q
    | ||||| ||| || ||| |||||||||| |||||||||||||    
T  36597264 gtctgccccttcctctgtcgcacctgcttctgctgagtctgct 36597222  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 35969502 - 35969610
Alignment:
Q  19 agttgacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttatttaaaaatca 118  Q
    |||||| |||||| |||||||| || ||  ||| |||||||||||| |||||| |||| ||  |||||||||||||||| |||||||||||| |||| ||    
T  35969502 agttgatttcttgcgacaaaactcaccgctggcggaagttaacatcctaacaatttactcaaattgttttaatcttaaggaggtagttatttgaaaacca 35969601  T
Q  119 taagggagc 127  Q
    |||| ||||    
T  35969602 taagtgagc 35969610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 268
Target Start/End: Original strand, 18361271 - 18361441
Alignment:
Q  86 tttaatcttaagcaggtagttatttaaaaatcataagggagccaagtgtggtaattannnnnnngacaatctaagcttagataattttaaatgaaacagc 185  Q
    |||||||||||||| |||||||||| |||| |||||||||||  |||||| |||||           ||||| ||||||| ||||||  ||||||||| |    
T  18361271 tttaatcttaagcaagtagttatttgaaaaccataagggagctgagtgtgttaatttttttttctcgaatctcagcttagctaattt--aatgaaacaac 18361368  T
Q  186 cataagaagagtttgtgattggttgatactaattactaaacaggttgaagaatctataaagggtgagaagattatcaactatc 268  Q
    ||||||||   |||||||||||||       ||||||||||||||||| ||||||||||||||||  || |||||||| ||||    
T  18361369 cataagaa---tttgtgattggtt-------attactaaacaggttgaggaatctataaagggtgcaaatattatcaattatc 18361441  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 18084429 - 18084480
Alignment:
Q  218 ttactaaacaggttgaagaatctataaagggtgagaagattatcaactatcg 269  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  18084429 ttactaaacaggttgcagaatctataaagggtgcgaagatcatcagctatcg 18084480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 36664580 - 36664529
Alignment:
Q  218 ttactaaacaggttgaagaatctataaagggtgagaagattatcaactatcg 269  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  36664580 ttactaaacaggttgcagaatctataaagggtgcgaagatcatcagctatcg 36664529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 36601589 - 36601486
Alignment:
Q  153 aatctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaattactaaacaggttgaagaatctataaagggtgag 252  Q
    ||||| ||||||| ||||||  ||||||||| |||||||||   |||||||||||||       ||||||||||||||||| ||||||||||||||||      
T  36601589 aatctcagcttagctaattt--aatgaaacaaccataagaa---tttgtgattggtt-------attactaaacaggttgaggaatctataaagggtgca 36601502  T
Q  253 aagattatcaactatc 268  Q
    || |||||||| ||||    
T  36601501 aatattatcaattatc 36601486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 36601657 - 36601608
Alignment:
Q  86 tttaatcttaagcaggtagttatttaaaaatcataagggagccaagtgtg 135  Q
    |||||||||||||| |||||||||| |||| |||||||||||  ||||||    
T  36601657 tttaatcttaagcaagtagttatttgaaaaccataagggagctgagtgtg 36601608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 18084309 - 18084361
Alignment:
Q  89 aatcttaagcaggtagttatttaaaaatcataagggagccaagtgtggtaatt 141  Q
    |||| ||||||||||| |||||||||||| |||||||||   |||||||||||    
T  18084309 aatcctaagcaggtaggtatttaaaaatcttaagggagctgtgtgtggtaatt 18084361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 36664700 - 36664648
Alignment:
Q  89 aatcttaagcaggtagttatttaaaaatcataagggagccaagtgtggtaatt 141  Q
    |||| ||||||||||| |||||||||||| |||||||||   |||||||||||    
T  36664700 aatcctaagcaggtaggtatttaaaaatcttaagggagctgtgtgtggtaatt 36664648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 35336944 - 35337047
Alignment:
Q  19 agttgacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttatttaaaaatca 118  Q
    |||||||||||||  ||||||| || |||||||  |||||||||||| |||||| ||| | |||| ||||||| |||||||||||||| |||||||| ||    
T  35336944 agttgacttcttgcaacaaaactcaccgtcggcgaaagttaacatcacaacaaagtacacgggttattttaatattaagcaggtagttgtttaaaaacca 35337043  T
Q  119 taag 122  Q
    ||||    
T  35337044 taag 35337047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 42601673 - 42601610
Alignment:
Q  154 atctaagcttagataattttaaatgaaacagccataagaagagtttgtgattggttgatactaa 217  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  42601673 atctgagcttagataatttcaaatgaaacaaccataagaagagtttgtgattggttgttactaa 42601610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 42601789 - 42601686
Alignment:
Q  19 agttgacttcttgtgacaaaacccatcgtcggctgaagttaacatcataacaaattacccaggttgttttaatcttaagcaggtagttatttaaaaatca 118  Q
    |||||| |||||| ||||||||    ||||||  |||||||| ||| ||||| |||||||  ||| |||| |||||||||||||||||||||||||| ||    
T  42601789 agttgatttcttgcgacaaaacttgccgtcggtggaagttaaaatcttaacagattacccgagttcttttgatcttaagcaggtagttatttaaaaacca 42601690  T
Q  119 taag 122  Q
    ||||    
T  42601689 taag 42601686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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