View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_high_8 (Length: 250)
Name: NF10999_high_8
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 23962266 - 23962505
Alignment:
| Q |
11 |
cagagaatatgggttgcttaattttcgtagatgtagatcaaataagaaaaatacataaaagtttataagctacaagagaaacatgaaacatgttcattga |
110 |
Q |
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| T |
23962266 |
cagagaatatgggttgcttaattttcctagatgtagatcaaataagaaaaacacataaaagtttataaggtacaagagcaacaagaaacatattcattga |
23962365 |
T |
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| Q |
111 |
actaacaaccctacctaggaattggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgataaacttctcctttggcttgcact |
210 |
Q |
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| T |
23962366 |
actaacaaccctacctaggaatcggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgataaacttctcctttggcttgcact |
23962465 |
T |
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| Q |
211 |
cctttcaaacggcattattagagacaaacagtcctttagc |
250 |
Q |
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| T |
23962466 |
cttttcaaacggcattattagagacaaacagtcctttagc |
23962505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 24001800 - 24001664
Alignment:
| Q |
114 |
aacaaccctacctaggaattggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgataaacttctcctttggcttgcactcct |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24001800 |
aacaaccctacctaggatttggaccacatatatctgattcattgatttcaatctgcatagagcccttgactgataaacttctcctttggcttgcactcct |
24001701 |
T |
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| Q |
214 |
ttcaaacggcattattagagacaaacagtcctttagc |
250 |
Q |
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| T |
24001700 |
ttcaataggcattactagagacaaacaatcctttagc |
24001664 |
T |
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