View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10999_low_1 (Length: 534)
Name: NF10999_low_1
Description: NF10999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10999_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 37844678 - 37844169
Alignment:
| Q |
1 |
tttgctacggtaccaccagtggaagaacctgagctgtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataa |
100 |
Q |
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| T |
37844678 |
tttgctacggtaccaccagtggaagaacctgagctgtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataa |
37844579 |
T |
|
| Q |
101 |
aacttttggatagcaaatgcaacatataattagcaatatggtagactactaatagttttcttctttgatacatcaaacttatacaatatgttatagcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844578 |
aacttttggatagcaaatgcaacatataattagcaatatggtagactac--atagttttcttctttgatacatcaaacttatacaatatgttatagcctt |
37844481 |
T |
|
| Q |
201 |
tgatgctaatgagacaagatagcaaagtaaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatg |
300 |
Q |
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| T |
37844480 |
tgatgctaatgagacaagatagcaaagtgaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatg |
37844381 |
T |
|
| Q |
301 |
attatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgatagg |
400 |
Q |
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| T |
37844380 |
attatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgatagg |
37844281 |
T |
|
| Q |
401 |
tgttgatgtctaacatcgacagaactttgatatatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtattggtg |
500 |
Q |
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| T |
37844280 |
tgttgatgtctaacatcgacagaacttcgatacatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtatcggtg |
37844181 |
T |
|
| Q |
501 |
catgtatattgt |
512 |
Q |
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| T |
37844180 |
catgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
434 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
494 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 490
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
434 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
490 |
Q |
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|||||||||||| ||||||||| || |||||||||||||| | ||||| |||||||| |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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